View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9835_high_3 (Length: 292)

Name: NF9835_high_3
Description: NF9835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9835_high_3
NF9835_high_3
[»] chr7 (1 HSPs)
chr7 (1-292)||(41752710-41752996)


Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 41752996 - 41752710
Alignment:
Q  1 ctaatattccacctgtaaaataaattctttccttcctttgtaaatacaacaaaaatcatatattttaagaaaaattccaacaaagaaatttccacagtac 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  41752996 ctaatattccacctgtaaaataaattatttccttcctttgtaaatacaacaaaaatcatatattttaagaaaaattccaacaaagaaatttccacagta- 41752898  T
Q  101 gtaattaatattccacctgtaaaattaaannnnnnnnaataggaaaatccaaacttaaagatagaaaaaacattactcccttaccaatagttgaggtatt 200  Q
       |||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||    
T  41752897 ---attaatattccacctgtaaaattaa-ttttttttaataggaaaatccaaacttaaagatagaaaaaacattactcccttaccaatatttgagggatt 41752802  T
Q  201 gcctgaatagaaagtggaggtgtagaagatagattgaaaagagaatcatcagagatagctttgacttccttgttatgaaaatcaacagcagc 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  41752801 gcctgaatagaaagtggaggtgtagaagatagattgaaaagagaatcatcagagatagctttgacttctttgttatgaaaatcaacagcagc 41752710  T

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