View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9835_high_7 (Length: 247)
Name: NF9835_high_7
Description: NF9835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9835_high_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 36 - 222
Target Start/End: Complemental strand, 5663378 - 5663194
Alignment:
| Q |
36 |
cacatgattctcataagcagtttatagtaacatgttagcaatatcagcatagaagaaaactattataacaacagtagtataataacaggaggaagatgaa |
135 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
5663378 |
cacatgattctcataagcagattatagtaacatgttagcaatatcagcacagaagaaaactattataacaacagtagtataataac---agaaagatgaa |
5663282 |
T |
|
| Q |
136 |
gaagttataacccaaggcagcagaacataactactggctcgtgagtacc-aaattgacaggaaatggaggagaacgtgaagctaatgt |
222 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
5663281 |
gaagttataaaccaaggcagcagaacataactactggctcgtgagtaccaaaactgacaggaaatggaggagaatgtgaagctaatgt |
5663194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 147 - 218
Target Start/End: Complemental strand, 52131504 - 52131437
Alignment:
| Q |
147 |
ccaaggcagcagaacataactactggctcgtgagtaccaaattgacaggaaatggaggagaacgtgaagcta |
218 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
52131504 |
ccaaggcagcagaacataact----tctcgtgagtaccaaattgacaggaaatggaggataacgtgacgcta |
52131437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 180
Target Start/End: Original strand, 11649126 - 11649159
Alignment:
| Q |
147 |
ccaaggcagcagaacataactactggctcgtgag |
180 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |
|
|
| T |
11649126 |
ccaaggcagcagaacataactgctggctcgtgag |
11649159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 208
Target Start/End: Complemental strand, 22007884 - 22007856
Alignment:
| Q |
180 |
gtaccaaattgacaggaaatggaggagaa |
208 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
22007884 |
gtaccaaattgacaggaaatggaggagaa |
22007856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University