View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9835_low_10 (Length: 287)
Name: NF9835_low_10
Description: NF9835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9835_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 17 - 279
Target Start/End: Complemental strand, 36157470 - 36157208
Alignment:
| Q |
17 |
aggtatgcttgtttcaatacttgaagccattgaagagatgaggcttacagtgctggaagctagggtttcttgtacagacaatttttgtttccaagctgtt |
116 |
Q |
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| T |
36157470 |
aggtatgcttgtttcaatacttgaagccattgaagagatgaggcttacagtgctggaagctagggtttcttgtacagacaatttttgtttccaagctgtt |
36157371 |
T |
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| Q |
117 |
ggagaagaggtaagatatatacatatagtaatcaacaagagaaaattgtatgtacaagagaacaattatttgatagtgtaaaaaatattttacatttttg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
36157370 |
ggagaagaggtaagatatatacatatagtaatcaacaagagaaaattgtacgtacaagagaacaattatttgatagtgtaaaaattattttacatttttg |
36157271 |
T |
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| Q |
217 |
ctgcatatcaattgaattttcatggtataagttcaacatgcgtatcattattctctctctctg |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36157270 |
ctgcatatcaattgaattttcatggtataagttcaacatgcgtatcattattctctctatctg |
36157208 |
T |
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