View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9835_low_11 (Length: 285)
Name: NF9835_low_11
Description: NF9835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9835_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 14 - 270
Target Start/End: Complemental strand, 28925084 - 28924828
Alignment:
| Q |
14 |
aggaatcaacagatcatcaaagcaagatgacatcaaccaagaaattctgctccagctttctaatgtgccaaaagatgtacctatcagccaaatttctgat |
113 |
Q |
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| T |
28925084 |
aggaatcaacagatcatcaaagcaagatgacatcagccaagaaattctgctccggctttctaatgtgccaaaagatgtacctatcagccaaatttctgat |
28924985 |
T |
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| Q |
114 |
gttgacttttctgaggtattattactttgccaacaatattttctgatgcaatatcccccaattctgaatcctggttgcaatcaaagtagtattttccaag |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28924984 |
gttgacttttctgaggtattattactttgccaacaatattttctgatgcaatatcccccaattctgaatcctggttgcaatcaaagtagtattttccaag |
28924885 |
T |
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| Q |
214 |
ttaaaatgaaactaattttctaaaccatttttctattagatgttgaatatactatat |
270 |
Q |
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| T |
28924884 |
ttaaaatgaaactaattttctaaaccatttttctattagatgttgaatatactatat |
28924828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 14 - 266
Target Start/End: Complemental strand, 28901456 - 28901204
Alignment:
| Q |
14 |
aggaatcaacagatcatcaaagcaagatgacatcaaccaagaaattctgctccagctttctaatgtgccaaaagatgtacctatcagccaaatttctgat |
113 |
Q |
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||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
28901456 |
aggaatcaaaagatcatcaaagcaagctgacatcaaccaagaaattctgctccggctttcttatgtgccaaaagatgtacctatcagccaaatttctgat |
28901357 |
T |
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| Q |
114 |
gttgacttttctgaggtattattactttgccaacaatattttctgatgcaatatcccccaattctgaatcctggttgcaatcaaagtagtattttccaag |
213 |
Q |
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| T |
28901356 |
gttgacttttctgaggtattattaatttgctaacaatattttctgctgcactatcccccaattctgaaacctggttgcaatcaaagtagtattttccaag |
28901257 |
T |
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| Q |
214 |
ttaaaatgaaactaattttctaaaccatttttctattagatgttgaatatact |
266 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
28901256 |
ttaaaatgaaactcattttctaaaccatttttctattagatgttgactatact |
28901204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 24 - 249
Target Start/End: Complemental strand, 28915877 - 28915651
Alignment:
| Q |
24 |
agatcatcaaagcaagatgacatcaaccaagaaattctgctccagctttctaatgtgccaaaagatgtacctatcagccaaatttctgatgttgactttt |
123 |
Q |
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||||||||||| ||||| || |||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
28915877 |
agatcatcaaaccaagacgaaatcaaccaagaaattctgctccggctttctaatgtgcccaaagatgtatctatcagccaaatttctgatgttgactttt |
28915778 |
T |
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| Q |
124 |
ctgaggtattattactttgccaacaatattttctgatgcaatatcccccaattctgaatcctggttgcaatcaaagtagtattttccaagttaaaat-ga |
222 |
Q |
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|||||||||||||||||||| |||||||||||||| |||||| |||| |||||||||| ||||||| ||||||||||||| ||||||||||||||| || |
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| T |
28915777 |
ctgaggtattattactttgctaacaatattttctgctgcaatgtcccacaattctgaaacctggtttcaatcaaagtagtggtttccaagttaaaatgga |
28915678 |
T |
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| Q |
223 |
aactaattttctaaaccatttttctat |
249 |
Q |
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|||| |||| | ||||||||||||||| |
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| T |
28915677 |
aactcatttccaaaaccatttttctat |
28915651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 47 - 266
Target Start/End: Complemental strand, 28933993 - 28933769
Alignment:
| Q |
47 |
caaccaagaaattctgctccagctttctaatgtgccaaaagatgtacctatcagccaaatttctgatgttgacttttctgaggtattattact------- |
139 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||| | ||||||||||||||||||| |||| |
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| T |
28933993 |
caaccaagaaattctgctccagctctctaatgtgccaaaagatgtacctatcagcaaaatatctgacgatgacttttctgaggtattaatactgtgataa |
28933894 |
T |
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| Q |
140 |
ttgccaacaatattttctgatgcaatatcccccaattctgaatcctggttgcaatcaaagtagtattttccaagttaaaat-gaaactaattttctaaac |
238 |
Q |
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||| |||| ||||||||| ||||||| | ||| || |||| |||||||||||||| ||||| ||||||||| ||| | |||||| ||||||||||| |
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| T |
28933893 |
ctgctaacagtattttctgccgcaatattctccatttatgaaacctggttgcaatca---tagtagtttccaagtaaaagtggaaacttattttctaaac |
28933797 |
T |
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| Q |
239 |
catttttctattagatgttgaatatact |
266 |
Q |
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||| ||||||| |||||||| ||||||| |
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| T |
28933796 |
catatttctataagatgttggatatact |
28933769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 14 - 266
Target Start/End: Complemental strand, 28890965 - 28890706
Alignment:
| Q |
14 |
aggaatcaacagatcatcaaagcaagatgacatcaaccaagaaattctgctccagctttctaatgtgccaaaagatgtacctatcagccaaatttctgat |
113 |
Q |
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||||||||| |||||||||||| | || || ||| |||||||||||| ||||| ||||||| ||||| || ||||||||||||||||| ||||||||||| |
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| T |
28890965 |
aggaatcaaaagatcatcaaagaaggaggaaatctaccaagaaattcagctccggctttcttatgtggcagaagatgtacctatcagcaaaatttctgat |
28890866 |
T |
|
| Q |
114 |
gttgacttttctgaggtattattactttg-------ccaacaatattttctgatgcaatatcccccaattctgaatcctggttgcaatcaaagtagtatt |
206 |
Q |
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| ||||||||||||||||||| || | || | |||| |||||||| |||||| | ||| | || |||| ||||||||||| || ||||| | |
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| T |
28890865 |
gatgacttttctgaggtattaatattgtgctaactactaacagtattttctactgcaatttacccaatttttgaaacctggttgcaaacagagtag-ctg |
28890767 |
T |
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| Q |
207 |
ttccaagttaaaat-gaaactaattttctaaaccatttttctattagatgttgaatatact |
266 |
Q |
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|| ||||| ||| | |||||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
28890766 |
tttcaagtaaaagtggaaactcattttctaaaccatttttctataagatgttgaatatact |
28890706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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