View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9835_low_12 (Length: 284)

Name: NF9835_low_12
Description: NF9835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9835_low_12
NF9835_low_12
[»] chr8 (3 HSPs)
chr8 (18-170)||(42943516-42943669)
chr8 (187-221)||(69629-69663)
chr8 (193-221)||(42941725-42941753)
[»] chr4 (2 HSPs)
chr4 (187-221)||(5234498-5234532)
chr4 (187-221)||(31804367-31804401)
[»] chr1 (1 HSPs)
chr1 (187-221)||(586898-586932)
[»] chr6 (1 HSPs)
chr6 (192-221)||(21443692-21443721)


Alignment Details
Target: chr8 (Bit Score: 134; Significance: 8e-70; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 18 - 170
Target Start/End: Complemental strand, 42943669 - 42943516
Alignment:
Q  18 tatatctactttattggttcaaatctgaaatgtcatttggttacaatgctaagttgttcgaaatcgttccaaaatggtttgtggagacaagtgccctacg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  42943669 tatatctactttattggttcaaatctgaaatgtcatttggttacaatgctaagttgttcgaaatcgttccaaaatggtttgtggagacaagtgccctagg 42943570  T
Q  118 catacgaataccagtacacaacttttcaatgtaga-tttcaacattattgagac 170  Q
    |||| |||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  42943569 catatgaataccagtacacaacttttcaatgtagattttcaacgttattgagac 42943516  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Complemental strand, 69663 - 69629
Alignment:
Q  187 agagatatgatatttgtacaatcactttgtgataa 221  Q
    ||||| |||||||||||||||||||||||||||||    
T  69663 agagaaatgatatttgtacaatcactttgtgataa 69629  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 221
Target Start/End: Complemental strand, 42941753 - 42941725
Alignment:
Q  193 atgatatttgtacaatcactttgtgataa 221  Q
    |||||||||||||||||||||||||||||    
T  42941753 atgatatttgtacaatcactttgtgataa 42941725  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Complemental strand, 5234532 - 5234498
Alignment:
Q  187 agagatatgatatttgtacaatcactttgtgataa 221  Q
    ||||| |||||||||||||||||||||||||||||    
T  5234532 agagaaatgatatttgtacaatcactttgtgataa 5234498  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Complemental strand, 31804401 - 31804367
Alignment:
Q  187 agagatatgatatttgtacaatcactttgtgataa 221  Q
    ||||| |||||||||||||||||||||||||||||    
T  31804401 agagaaatgatatttgtacaatcactttgtgataa 31804367  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Original strand, 586898 - 586932
Alignment:
Q  187 agagatatgatatttgtacaatcactttgtgataa 221  Q
    ||||| |||||||||||||||||||||||||||||    
T  586898 agagaaatgatatttgtacaatcactttgtgataa 586932  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 221
Target Start/End: Original strand, 21443692 - 21443721
Alignment:
Q  192 tatgatatttgtacaatcactttgtgataa 221  Q
    ||||||||||||||||||||||||||||||    
T  21443692 tatgatatttgtacaatcactttgtgataa 21443721  T

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