View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9835_low_15 (Length: 248)

Name: NF9835_low_15
Description: NF9835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9835_low_15
NF9835_low_15
[»] chr3 (10 HSPs)
chr3 (1-218)||(14338324-14338547)
chr3 (127-199)||(20503479-20503553)
chr3 (134-187)||(26492183-26492236)
chr3 (127-185)||(40993306-40993364)
chr3 (134-178)||(55401112-55401156)
chr3 (135-185)||(10954982-10955032)
chr3 (157-207)||(49179716-49179768)
chr3 (141-185)||(3865704-3865748)
chr3 (134-178)||(7171538-7171582)
chr3 (135-187)||(25093530-25093582)
[»] chr7 (14 HSPs)
chr7 (134-207)||(5937399-5937474)
chr7 (127-199)||(21880166-21880240)
chr7 (125-185)||(7197266-7197326)
chr7 (135-185)||(25956475-25956525)
chr7 (141-185)||(33994242-33994286)
chr7 (127-185)||(598238-598296)
chr7 (163-208)||(10702551-10702597)
chr7 (157-207)||(1885579-1885631)
chr7 (134-185)||(8234176-8234227)
chr7 (127-178)||(21864845-21864896)
chr7 (127-185)||(7973094-7973152)
chr7 (156-185)||(7438736-7438765)
chr7 (134-178)||(15680846-15680890)
chr7 (157-193)||(25822677-25822713)
[»] chr4 (17 HSPs)
chr4 (134-207)||(13307883-13307958)
chr4 (127-207)||(44362672-44362754)
chr4 (127-185)||(29205474-29205532)
chr4 (128-185)||(12797310-12797367)
chr4 (134-199)||(21945517-21945584)
chr4 (151-206)||(13117436-13117493)
chr4 (135-185)||(16073424-16073474)
chr4 (127-185)||(23292957-23293015)
chr4 (134-175)||(4157189-4157230)
chr4 (134-175)||(4157476-4157517)
chr4 (134-178)||(34306782-34306826)
chr4 (135-185)||(28964227-28964277)
chr4 (127-185)||(49431056-49431114)
chr4 (141-178)||(35157970-35158007)
chr4 (158-200)||(37496717-37496761)
chr4 (127-167)||(30982838-30982878)
chr4 (141-185)||(54580008-54580052)
[»] chr2 (15 HSPs)
chr2 (127-178)||(18840984-18841035)
chr2 (135-207)||(43585984-43586058)
chr2 (127-185)||(2438690-2438748)
chr2 (128-185)||(30404822-30404879)
chr2 (127-187)||(15972901-15972961)
chr2 (136-205)||(24067758-24067829)
chr2 (151-208)||(37491850-37491909)
chr2 (147-185)||(5040764-5040802)
chr2 (124-178)||(28596506-28596560)
chr2 (157-207)||(33884057-33884109)
chr2 (127-183)||(21091755-21091811)
chr2 (134-185)||(37559007-37559058)
chr2 (135-181)||(12224257-12224303)
chr2 (163-206)||(37211892-37211937)
chr2 (162-207)||(13501084-13501131)
[»] chr8 (16 HSPs)
chr8 (127-185)||(31557026-31557084)
chr8 (136-201)||(42874534-42874601)
chr8 (127-187)||(44462166-44462226)
chr8 (127-187)||(44469699-44469759)
chr8 (127-178)||(5813629-5813680)
chr8 (127-178)||(33405355-33405406)
chr8 (135-185)||(18407749-18407799)
chr8 (156-207)||(27733853-27733906)
chr8 (127-185)||(36450725-36450783)
chr8 (157-207)||(24295138-24295190)
chr8 (174-207)||(25104613-25104646)
chr8 (141-199)||(40332205-40332265)
chr8 (149-185)||(4948682-4948718)
chr8 (127-183)||(20679366-20679422)
chr8 (162-207)||(26915246-26915293)
chr8 (162-203)||(31119097-31119140)
[»] chr1 (12 HSPs)
chr1 (127-185)||(1815287-1815345)
chr1 (127-185)||(40258904-40258962)
chr1 (142-185)||(38078647-38078690)
chr1 (127-185)||(18190079-18190137)
chr1 (134-178)||(22515865-22515909)
chr1 (134-178)||(46348361-46348405)
chr1 (146-185)||(51410055-51410094)
chr1 (135-185)||(18337359-18337409)
chr1 (135-176)||(21530728-21530769)
chr1 (136-185)||(37598861-37598910)
chr1 (146-178)||(22881606-22881638)
chr1 (3-63)||(33152696-33152756)
[»] chr6 (20 HSPs)
chr6 (127-178)||(32978870-32978921)
chr6 (152-207)||(6751878-6751935)
chr6 (127-185)||(34595164-34595222)
chr6 (157-207)||(19369823-19369875)
chr6 (128-185)||(28152128-28152185)
chr6 (127-199)||(28715309-28715383)
chr6 (127-207)||(32225361-32225443)
chr6 (141-195)||(30851620-30851674)
chr6 (135-176)||(4877982-4878023)
chr6 (134-209)||(26402658-26402737)
chr6 (127-183)||(16833340-16833396)
chr6 (134-173)||(24645523-24645562)
chr6 (164-207)||(10031576-10031621)
chr6 (157-187)||(15489733-15489763)
chr6 (157-212)||(22745958-22746015)
chr6 (3-65)||(28077215-28077277)
chr6 (147-205)||(7377987-7378047)
chr6 (136-185)||(7977810-7977859)
chr6 (136-185)||(27904016-27904065)
chr6 (135-167)||(18367895-18367927)
[»] scaffold0083 (1 HSPs)
scaffold0083 (134-185)||(45508-45559)
[»] chr5 (17 HSPs)
chr5 (127-178)||(42893397-42893448)
chr5 (162-207)||(15302531-15302576)
chr5 (158-208)||(30080503-30080555)
chr5 (151-187)||(19167571-19167607)
chr5 (146-185)||(15884018-15884057)
chr5 (127-199)||(27932249-27932323)
chr5 (127-199)||(28588645-28588719)
chr5 (135-199)||(30502367-30502433)
chr5 (135-199)||(30542710-30542776)
chr5 (127-185)||(21191027-21191085)
chr5 (135-185)||(21576724-21576774)
chr5 (15-65)||(22976404-22976454)
chr5 (15-61)||(33695359-33695405)
chr5 (128-185)||(23012380-23012437)
chr5 (157-185)||(8420057-8420085)
chr5 (151-204)||(16207586-16207641)
chr5 (141-185)||(42029782-42029826)
[»] scaffold0652 (1 HSPs)
scaffold0652 (127-185)||(433-491)
[»] scaffold0314 (1 HSPs)
scaffold0314 (156-207)||(8954-9007)
[»] scaffold0050 (1 HSPs)
scaffold0050 (128-185)||(70308-70365)
[»] scaffold0053 (1 HSPs)
scaffold0053 (134-178)||(8835-8879)
[»] scaffold0512 (1 HSPs)
scaffold0512 (136-178)||(5016-5058)
[»] scaffold0697 (1 HSPs)
scaffold0697 (135-176)||(1683-1724)


Alignment Details
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 14338324 - 14338547
Alignment:
Q  1 ttggctctgttagataaatatagtggatagttgataagctaccttatagtttatagcggatagctaataagctagctgatggccttaccaaacagagccc 100  Q
    |||| |||||| | ||||||||| ||||| |||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  14338324 ttggttctgtttggtaaatatagcggataattgataagctacctgatagcttatagcggatagctgataagctagctgatggccttaccaaacagagccc 14338423  T
Q  101 ttaa----ttgttgaagcaaaacttttggagtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttc 194  Q
    ||||    ||||||||| |||||||||||||||||| ||||||||| | ||||||||||||||||||||| |||| ||||||||||||  |||||||||     
T  14338424 ttaactgtttgttgaaggaaaacttttggagtgtcccggtgtccgatacgtgtcgtgtctgacaccgacatttgtgattacattgaattatgtcattttt 14338523  T
Q  195 tcaaaattttatcatgtctgtgtc 218  Q
    ||||||||||||| ||||||||||    
T  14338524 tcaaaattttatcgtgtctgtgtc 14338547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 127 - 199
Target Start/End: Complemental strand, 20503553 - 20503479
Alignment:
Q  127 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaa 199  Q
    |||||| |||||| |||||||||||||||  ||||||||||||||||||||| |||||  ||||||||| |||||    
T  20503553 gtgtcccggtgtcagacatgtgtcgtgtccaacaccgacacttgtaattacactgaattatgtcattttttcaaa 20503479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 187
Target Start/End: Original strand, 26492183 - 26492236
Alignment:
Q  134 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaattgt 187  Q
    |||||| ||||||||||||||| |||||||| ||||||||||||| ||||||||    
T  26492183 ggtgtcagacatgtgtcgtgtccgacaccgatacttgtaattacactgaattgt 26492236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 185
Target Start/End: Original strand, 40993306 - 40993364
Alignment:
Q  127 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 185  Q
    |||||| |||||| ||||||||||||||| ||||||||||| | |||||||| ||||||    
T  40993306 gtgtcccggtgtcggacatgtgtcgtgtccgacaccgacacatataattacactgaatt 40993364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 178
Target Start/End: Complemental strand, 55401156 - 55401112
Alignment:
Q  134 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattaca 178  Q
    |||||| |||| |||||||||| ||||||||||||||||||||||    
T  55401156 ggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattaca 55401112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 185
Target Start/End: Complemental strand, 10955032 - 10954982
Alignment:
Q  135 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 185  Q
    ||||| |||| |||||||||| ||||||||||||||| |||||| ||||||    
T  10955032 gtgtcggacacgtgtcgtgtccgacaccgacacttgtgattacactgaatt 10954982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 49179716 - 49179768
Alignment:
Q  157 gacaccgacacttgtaattacattgaat--tgtcattttctcaaaattttatc 207  Q
    ||||||||||||||| ||||||| ||||  ||||| |||||||||||||||||    
T  49179716 gacaccgacacttgtgattacatcgaattatgtcactttctcaaaattttatc 49179768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 185
Target Start/End: Complemental strand, 3865748 - 3865704
Alignment:
Q  141 gacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 185  Q
    |||| |||||||||| |||||||||||||||||||| | ||||||    
T  3865748 gacacgtgtcgtgtcagacaccgacacttgtaattatactgaatt 3865704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 178
Target Start/End: Complemental strand, 7171582 - 7171538
Alignment:
Q  134 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattaca 178  Q
    |||||| |||| |||||||||| |||||| |||||||||||||||    
T  7171582 ggtgtcggacacgtgtcgtgtccgacaccaacacttgtaattaca 7171538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 187
Target Start/End: Complemental strand, 25093582 - 25093530
Alignment:
Q  135 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaattgt 187  Q
    ||||| ||||||||| ||||| ||||||||||| | |||||||| ||||||||    
T  25093582 gtgtcggacatgtgttgtgtccgacaccgacacatataattacactgaattgt 25093530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 134 - 207
Target Start/End: Original strand, 5937399 - 5937474
Alignment:
Q  134 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaaattttatc 207  Q
    |||||||||||||| ||||| | ||||| ||||||||| ||||||||||||  |||||||||||||||||||||||    
T  5937399 ggtgtccgacatgtatcgtgaccgacacagacacttgtgattacattgaattatgtcattttctcaaaattttatc 5937474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 199
Target Start/End: Complemental strand, 21880240 - 21880166
Alignment:
Q  127 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaa 199  Q
    |||||| |||||| ||||||||||||||| |||||||||||||||||||||| |||||  ||| |||||||||||    
T  21880240 gtgtcctggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtaattttctcaaa 21880166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 185
Target Start/End: Original strand, 7197266 - 7197326
Alignment:
Q  125 gagtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 185  Q
    |||| ||| |||||| ||||||||| ||||| |||||||||||||||||||||||||||||    
T  7197266 gagtatcccggtgtcggacatgtgttgtgtccgacaccgacacttgtaattacattgaatt 7197326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 185
Target Start/End: Complemental strand, 25956525 - 25956475
Alignment:
Q  135 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 185  Q
    ||||||||||||| ||||||| ||||||||||||||| |||||||||||||    
T  25956525 gtgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaatt 25956475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 141 - 185
Target Start/End: Complemental strand, 33994286 - 33994242
Alignment:
Q  141 gacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 185  Q
    ||||||||||||||||||||||||||||||||||| || ||||||    
T  33994286 gacatgtgtcgtgtctgacaccgacacttgtaattgcactgaatt 33994242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 598296 - 598238
Alignment:
Q  127 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 185  Q
    |||||| |||||| |||| ||||||||||||||||||||||||  ||||||||| ||||    
T  598296 gtgtcccggtgtcggacacgtgtcgtgtctgacaccgacacttacaattacatttaatt 598238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 163 - 208
Target Start/End: Original strand, 10702551 - 10702597
Alignment:
Q  163 gacacttgtaattacattgaat-tgtcattttctcaaaattttatca 208  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||    
T  10702551 gacacttataattacattgaatatgtcattttctcaaaattttatca 10702597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 207
Target Start/End: Complemental strand, 1885631 - 1885579
Alignment:
Q  157 gacaccgacacttgtaattacattgaat--tgtcattttctcaaaattttatc 207  Q
    ||||||||||||||| ||||||||||||  ||||||||| |||||||||||||    
T  1885631 gacaccgacacttgtgattacattgaattatgtcattttttcaaaattttatc 1885579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 185
Target Start/End: Complemental strand, 8234227 - 8234176
Alignment:
Q  134 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 185  Q
    |||||| ||||||||||||||| ||||||| ||||||||| |||| ||||||    
T  8234227 ggtgtcggacatgtgtcgtgtccgacaccggcacttgtaactacactgaatt 8234176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 178
Target Start/End: Complemental strand, 21864896 - 21864845
Alignment:
Q  127 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattaca 178  Q
    |||||| |||||| |||| |||||||||| |||| |||||||||||||||||    
T  21864896 gtgtcccggtgtcggacacgtgtcgtgtccgacagcgacacttgtaattaca 21864845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 185
Target Start/End: Original strand, 7973094 - 7973152
Alignment:
Q  127 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 185  Q
    |||||| | |||| |||||||||||||||| ||||| ||| ||||||||||||| ||||    
T  7973094 gtgtcccgatgtcggacatgtgtcgtgtctcacaccaacatttgtaattacattaaatt 7973152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 185
Target Start/End: Complemental strand, 7438765 - 7438736
Alignment:
Q  156 tgacaccgacacttgtaattacattgaatt 185  Q
    ||||||||||||||||||||||||||||||    
T  7438765 tgacaccgacacttgtaattacattgaatt 7438736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 178
Target Start/End: Complemental strand, 15680890 - 15680846
Alignment:
Q  134 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattaca 178  Q
    |||||| |||| |||||||||| ||||||||||||| ||||||||    
T  15680890 ggtgtcggacacgtgtcgtgtccgacaccgacacttataattaca 15680846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 193
Target Start/End: Complemental strand, 25822713 - 25822677
Alignment:
Q  157 gacaccgacacttgtaattacattgaattgtcatttt 193  Q
    |||||||||||||||||||||| |||||||| |||||    
T  25822713 gacaccgacacttgtaattacactgaattgtgatttt 25822677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 134 - 207
Target Start/End: Complemental strand, 13307958 - 13307883
Alignment:
Q  134 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaaattttatc 207  Q
    |||||| |||| |||||||||| |||||| |||||||| ||||||||||||  |||||||||||||||||||||||    
T  13307958 ggtgtctgacacgtgtcgtgtccgacaccaacacttgtgattacattgaattatgtcattttctcaaaattttatc 13307883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 207
Target Start/End: Complemental strand, 44362754 - 44362672
Alignment:
Q  127 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaaattttatc 207  Q
    |||||| | ||||||| | ||||||||||||||||| |||||||| |||||||| |||  |||||||||||||||||||||||    
T  44362754 gtgtcccgatgtccgatacgtgtcgtgtctgacaccaacacttgtgattacattaaattatgtcattttctcaaaattttatc 44362672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 29205532 - 29205474
Alignment:
Q  127 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 185  Q
    |||||| |||||| |||||||||||||||  ||||||||||||||||||||| ||||||    
T  29205532 gtgtcccggtgtcggacatgtgtcgtgtccaacaccgacacttgtaattacactgaatt 29205474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 185
Target Start/End: Original strand, 12797310 - 12797367
Alignment:
Q  128 tgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 185  Q
    ||||| |||||| ||||||| ||||||| |||||||||||||||||||||| ||||||    
T  12797310 tgtcccggtgtcagacatgtatcgtgtccgacaccgacacttgtaattacactgaatt 12797367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 199
Target Start/End: Complemental strand, 21945584 - 21945517
Alignment:
Q  134 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaa 199  Q
    |||||| |||||||||| |||| |||||||||||||||||||||| |||||  ||||||||| |||||    
T  21945584 ggtgtcggacatgtgtcatgtccgacaccgacacttgtaattacactgaattatgtcattttttcaaa 21945517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 151 - 206
Target Start/End: Complemental strand, 13117493 - 13117436
Alignment:
Q  151 gtgtctgacaccgacacttgtaattacattgaa--ttgtcattttctcaaaattttat 206  Q
    ||||| ||||||||||||||| |||||||||||  ||||||||||||| |||||||||    
T  13117493 gtgtccgacaccgacacttgtgattacattgaattttgtcattttctccaaattttat 13117436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 135 - 185
Target Start/End: Complemental strand, 16073474 - 16073424
Alignment:
Q  135 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 185  Q
    ||||| ||||||| ||||||| |||||||||||||||||||||| ||||||    
T  16073474 gtgtcggacatgtatcgtgtccgacaccgacacttgtaattacactgaatt 16073424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 185
Target Start/End: Original strand, 23292957 - 23293015
Alignment:
Q  127 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 185  Q
    |||||| |||||| |||| |||||||||| |||||||||||||||||||| | ||||||    
T  23292957 gtgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattatactgaatt 23293015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 175
Target Start/End: Complemental strand, 4157230 - 4157189
Alignment:
Q  134 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaatt 175  Q
    |||||| ||||||||||||||| |||||||||||||||||||    
T  4157230 ggtgtcggacatgtgtcgtgtccgacaccgacacttgtaatt 4157189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 175
Target Start/End: Complemental strand, 4157517 - 4157476
Alignment:
Q  134 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaatt 175  Q
    |||||| ||||||||||||||| |||||||||||||||||||    
T  4157517 ggtgtcggacatgtgtcgtgtccgacaccgacacttgtaatt 4157476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 34306782 - 34306826
Alignment:
Q  134 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattaca 178  Q
    |||||| |||| |||||||||| ||||||||||||||||||||||    
T  34306782 ggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattaca 34306826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 185
Target Start/End: Original strand, 28964227 - 28964277
Alignment:
Q  135 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 185  Q
    ||||| || |||||||||||| ||||| |||||||||||||||| ||||||    
T  28964227 gtgtcggatatgtgtcgtgtccgacacagacacttgtaattacactgaatt 28964277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 49431114 - 49431056
Alignment:
Q  127 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 185  Q
    |||||| |||||  |||| |||||||||| ||||||||||||| |||||||| ||||||    
T  49431114 gtgtcccggtgttggacacgtgtcgtgtccgacaccgacacttttaattacactgaatt 49431056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 35157970 - 35158007
Alignment:
Q  141 gacatgtgtcgtgtctgacaccgacacttgtaattaca 178  Q
    ||||||||||||||| ||||||||||||| ||||||||    
T  35157970 gacatgtgtcgtgtcagacaccgacacttataattaca 35158007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 200
Target Start/End: Complemental strand, 37496761 - 37496717
Alignment:
Q  158 acaccgacacttgtaattacattgaat--tgtcattttctcaaaa 200  Q
    |||||||||||||| ||||||||||||  ||||||||||||||||    
T  37496761 acaccgacacttgtgattacattgaattatgtcattttctcaaaa 37496717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 167
Target Start/End: Original strand, 30982838 - 30982878
Alignment:
Q  127 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacac 167  Q
    |||||| |||||| |||| ||||||||||||||||||||||    
T  30982838 gtgtcccggtgtcggacacgtgtcgtgtctgacaccgacac 30982878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 185
Target Start/End: Original strand, 54580008 - 54580052
Alignment:
Q  141 gacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 185  Q
    |||| |||||||||| ||||||||||||| |||||||| ||||||    
T  54580008 gacacgtgtcgtgtccgacaccgacacttataattacactgaatt 54580052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 178
Target Start/End: Original strand, 18840984 - 18841035
Alignment:
Q  127 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattaca 178  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  18840984 gtgtcccggtgtcggacatgtgtcgtgtctgacaccgacacttgtaattaca 18841035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 43585984 - 43586058
Alignment:
Q  135 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaaattttatc 207  Q
    ||||| |||| || ||||||| ||||||||||||||| ||||||||||||  |||||||||||||||||||||||    
T  43585984 gtgtctgacacgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcattttctcaaaattttatc 43586058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 127 - 185
Target Start/End: Original strand, 2438690 - 2438748
Alignment:
Q  127 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 185  Q
    |||||| |||||| ||||||||||||||| |||||||||||||||||||||| ||||||    
T  2438690 gtgtcccggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattacactgaatt 2438748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 185
Target Start/End: Original strand, 30404822 - 30404879
Alignment:
Q  128 tgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 185  Q
    ||||| |||||| ||||||||||||||| ||| |||||||||||||||||| ||||||    
T  30404822 tgtcctggtgtcggacatgtgtcgtgtccgacgccgacacttgtaattacactgaatt 30404879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 15972961 - 15972901
Alignment:
Q  127 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaattgt 187  Q
    |||||| || ||| |||| |||||||||| |||||||||||||||||||||| ||||||||    
T  15972961 gtgtcccggcgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactgaattgt 15972901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 205
Target Start/End: Complemental strand, 24067829 - 24067758
Alignment:
Q  136 tgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaaatttta 205  Q
    |||| |||| |||||||||||||||||||||||||| ||| |||| |||  || ||||||||||||||||||    
T  24067829 tgtctgacacgtgtcgtgtctgacaccgacacttgtgatttcatttaattatgacattttctcaaaatttta 24067758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 151 - 208
Target Start/End: Original strand, 37491850 - 37491909
Alignment:
Q  151 gtgtctgacaccgacacttgtaattacattgaatt--gtcattttctcaaaattttatca 208  Q
    ||||||||||||||||| | |||||||||||||||  || ||||||||||||||||||||    
T  37491850 gtgtctgacaccgacacatttaattacattgaattaagttattttctcaaaattttatca 37491909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 147 - 185
Target Start/End: Complemental strand, 5040802 - 5040764
Alignment:
Q  147 tgtcgtgtctgacaccgacacttgtaattacattgaatt 185  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  5040802 tgtcgtgtccgacaccgacacttgtaattacattgaatt 5040764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 124 - 178
Target Start/End: Complemental strand, 28596560 - 28596506
Alignment:
Q  124 ggagtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattaca 178  Q
    |||||||||| ||||| |||| |||||||||| ||||||||||||| ||||||||    
T  28596560 ggagtgtccgagtgtcggacacgtgtcgtgtccgacaccgacacttataattaca 28596506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 207
Target Start/End: Complemental strand, 33884109 - 33884057
Alignment:
Q  157 gacaccgacacttgtaattacattgaat--tgtcattttctcaaaattttatc 207  Q
    |||||||||||||||||||||| |||||  ||||||||||||| |||||||||    
T  33884109 gacaccgacacttgtaattacactgaatcatgtcattttctcacaattttatc 33884057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 21091811 - 21091755
Alignment:
Q  127 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaa 183  Q
    |||||| ||||||||||| ||| | |||||||||| |||||||||||||||| ||||    
T  21091811 gtgtcccggtgtccgacaggtggcttgtctgacactgacacttgtaattacactgaa 21091755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 185
Target Start/End: Complemental strand, 37559058 - 37559007
Alignment:
Q  134 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 185  Q
    |||||| |||| |||||  ||| |||||||||||||||||||||||||||||    
T  37559058 ggtgtcggacacgtgtcaagtccgacaccgacacttgtaattacattgaatt 37559007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 181
Target Start/End: Complemental strand, 12224303 - 12224257
Alignment:
Q  135 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattg 181  Q
    ||||| |||| || ||||||| |||||||||||||||||||||||||    
T  12224303 gtgtcggacacgtatcgtgtccgacaccgacacttgtaattacattg 12224257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 206
Target Start/End: Original strand, 37211892 - 37211937
Alignment:
Q  163 gacacttgtaattacattgaat--tgtcattttctcaaaattttat 206  Q
    ||||||||||||||||||||||  |||||||||||| |||||||||    
T  37211892 gacacttgtaattacattgaattgtgtcattttctcgaaattttat 37211937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 13501084 - 13501131
Alignment:
Q  162 cgacacttgtaattacattgaat--tgtcattttctcaaaattttatc 207  Q
    |||||||||| ||||||||||||  ||||||||||| |||||||||||    
T  13501084 cgacacttgtgattacattgaattatgtcattttcttaaaattttatc 13501131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 31557084 - 31557026
Alignment:
Q  127 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 185  Q
    |||||| |||||| |||||||||||||||||||||||| ||||||||||||| ||||||    
T  31557084 gtgtcctggtgtcggacatgtgtcgtgtctgacaccgaaacttgtaattacactgaatt 31557026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 42874601 - 42874534
Alignment:
Q  136 tgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaaat 201  Q
    |||||||||||||| |||||  |||| ||||||||| ||||||||||||  |||||||||||||||||    
T  42874601 tgtccgacatgtgttgtgtccaacactgacacttgtgattacattgaattatgtcattttctcaaaat 42874534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 44462166 - 44462226
Alignment:
Q  127 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaattgt 187  Q
    |||||| |||||| ||||||| ||||||||||||||||||| | | |||| ||||||||||    
T  44462166 gtgtcccggtgtcggacatgtatcgtgtctgacaccgacacatatgattaaattgaattgt 44462226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 44469699 - 44469759
Alignment:
Q  127 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaattgt 187  Q
    |||||| |||||| ||||||| ||||||||||||||||||| | | |||| ||||||||||    
T  44469699 gtgtcccggtgtcggacatgtatcgtgtctgacaccgacacatatgattaaattgaattgt 44469759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 178
Target Start/End: Complemental strand, 5813680 - 5813629
Alignment:
Q  127 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattaca 178  Q
    |||||| |||||| |||| |||||||||| |||||||||||||||| |||||    
T  5813680 gtgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgtatttaca 5813629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 178
Target Start/End: Original strand, 33405355 - 33405406
Alignment:
Q  127 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattaca 178  Q
    |||||| |||||| ||||||||||||||| ||||||||||| | ||||||||    
T  33405355 gtgtccaggtgtcagacatgtgtcgtgtccgacaccgacacatataattaca 33405406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 185
Target Start/End: Complemental strand, 18407799 - 18407749
Alignment:
Q  135 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 185  Q
    ||||| ||||||||||||||| | || ||||||||||||||||| ||||||    
T  18407799 gtgtcggacatgtgtcgtgtccggcagcgacacttgtaattacactgaatt 18407749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 207
Target Start/End: Complemental strand, 27733906 - 27733853
Alignment:
Q  156 tgacaccgacacttgtaattacattgaat--tgtcattttctcaaaattttatc 207  Q
    ||||||| |||||||| ||||||||||||  | |||||||||||||||||||||    
T  27733906 tgacaccaacacttgtgattacattgaattatatcattttctcaaaattttatc 27733853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 185
Target Start/End: Original strand, 36450725 - 36450783
Alignment:
Q  127 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 185  Q
    |||||| |||||| |||| | |||||||| |||||| ||||||||||||||| ||||||    
T  36450725 gtgtcctggtgtcggacacgcgtcgtgtccgacacctacacttgtaattacactgaatt 36450783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 24295138 - 24295190
Alignment:
Q  157 gacaccgacacttgtaattacattgaat--tgtcattttctcaaaattttatc 207  Q
    ||||||||||||||| |||||||| |||  ||||||||||||| |||||||||    
T  24295138 gacaccgacacttgtgattacattaaattgtgtcattttctcacaattttatc 24295190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 25104613 - 25104646
Alignment:
Q  174 ttacattgaattgtcattttctcaaaattttatc 207  Q
    |||||||||||||||||||| |||||||||||||    
T  25104613 ttacattgaattgtcattttgtcaaaattttatc 25104646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 199
Target Start/End: Complemental strand, 40332265 - 40332205
Alignment:
Q  141 gacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaa 199  Q
    |||| ||||||||||  ||||||||||||||||||||| |||||  ||| |||||||||||    
T  40332265 gacacgtgtcgtgtcccacaccgacacttgtaattacactgaattatgtgattttctcaaa 40332205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 4948718 - 4948682
Alignment:
Q  149 tcgtgtctgacaccgacacttgtaattacattgaatt 185  Q
    ||||||| |||||||||||||||||||||| ||||||    
T  4948718 tcgtgtccgacaccgacacttgtaattacactgaatt 4948682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 20679366 - 20679422
Alignment:
Q  127 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaa 183  Q
    |||||| |||||| |||| |||| | ||||||||||||||||| |||||||| ||||    
T  20679366 gtgtcccggtgtcggacacgtgttgcgtctgacaccgacacttataattacactgaa 20679422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 26915246 - 26915293
Alignment:
Q  162 cgacacttgtaattacattgaatt--gtcattttctcaaaattttatc 207  Q
    |||||||||| |||||||| ||||  ||||||||||||||||||||||    
T  26915246 cgacacttgtgattacattaaattatgtcattttctcaaaattttatc 26915293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 31119140 - 31119097
Alignment:
Q  162 cgacacttgtaattacattgaat--tgtcattttctcaaaattt 203  Q
    |||||||||| ||||||||||||  |||||||||||||||||||    
T  31119140 cgacacttgtgattacattgaattatgtcattttctcaaaattt 31119097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 1815345 - 1815287
Alignment:
Q  127 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 185  Q
    |||||| |||||| ||||||||||||||| |||||||||||||||||||||| ||||||    
T  1815345 gtgtcccggtgtcggacatgtgtcgtgtcggacaccgacacttgtaattacactgaatt 1815287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 127 - 185
Target Start/End: Original strand, 40258904 - 40258962
Alignment:
Q  127 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 185  Q
    |||||| |||||| |||| ||||||||||||||||||||||||||||||||| ||||||    
T  40258904 gtgtcctggtgtcggacaggtgtcgtgtctgacaccgacacttgtaattacactgaatt 40258962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 185
Target Start/End: Original strand, 38078647 - 38078690
Alignment:
Q  142 acatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 185  Q
    |||||||||||||| |||||||||||||||||||||||||||||    
T  38078647 acatgtgtcgtgtccgacaccgacacttgtaattacattgaatt 38078690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 185
Target Start/End: Original strand, 18190079 - 18190137
Alignment:
Q  127 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 185  Q
    |||||| |||||| |||| |||| |||||||||| ||||||||||||||||| ||||||    
T  18190079 gtgtcccggtgtcggacacgtgttgtgtctgacatcgacacttgtaattacactgaatt 18190137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 22515865 - 22515909
Alignment:
Q  134 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattaca 178  Q
    |||||| || |||||||||||| ||||||||||||||||||||||    
T  22515865 ggtgtcggatatgtgtcgtgtccgacaccgacacttgtaattaca 22515909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 46348361 - 46348405
Alignment:
Q  134 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattaca 178  Q
    |||||| |||| |||||||||| ||||||||||||||||||||||    
T  46348361 ggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattaca 46348405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 185
Target Start/End: Complemental strand, 51410094 - 51410055
Alignment:
Q  146 gtgtcgtgtctgacaccgacacttgtaattacattgaatt 185  Q
    |||||||||| |||||||||||||||||||||| ||||||    
T  51410094 gtgtcgtgtccgacaccgacacttgtaattacactgaatt 51410055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 185
Target Start/End: Complemental strand, 18337409 - 18337359
Alignment:
Q  135 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 185  Q
    ||||| |||| |||| ||||| |||||||||||||||||||||| ||||||    
T  18337409 gtgtcggacacgtgttgtgtccgacaccgacacttgtaattacactgaatt 18337359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 176
Target Start/End: Complemental strand, 21530769 - 21530728
Alignment:
Q  135 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaatta 176  Q
    ||||| ||||||||||||||| ||||||||||||| ||||||    
T  21530769 gtgtcggacatgtgtcgtgtccgacaccgacacttataatta 21530728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 185
Target Start/End: Complemental strand, 37598910 - 37598861
Alignment:
Q  136 tgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 185  Q
    |||| |||| |||||||||| ||||||||||||| |||||||| ||||||    
T  37598910 tgtcggacacgtgtcgtgtccgacaccgacacttataattacactgaatt 37598861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 178
Target Start/End: Original strand, 22881606 - 22881638
Alignment:
Q  146 gtgtcgtgtctgacaccgacacttgtaattaca 178  Q
    |||||||||| ||||||||||||||||||||||    
T  22881606 gtgtcgtgtccgacaccgacacttgtaattaca 22881638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 33152756 - 33152696
Alignment:
Q  3 ggctctgttagataaatatagtggatagttgataagctaccttatagtttatagcggatag 63  Q
    |||||| || |||||| |||| |||||| |||||||||| || |||||||||||| |||||    
T  33152756 ggctctatttgataaaaatagcggatagctgataagctagctgatagtttatagctgatag 33152696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 127 - 178
Target Start/End: Original strand, 32978870 - 32978921
Alignment:
Q  127 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattaca 178  Q
    |||||| |||||| ||||||||||||||| ||||||||||||||||||||||    
T  32978870 gtgtcccggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattaca 32978921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 152 - 207
Target Start/End: Original strand, 6751878 - 6751935
Alignment:
Q  152 tgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaaattttatc 207  Q
    |||| ||||||||||||||| ||||||||||||  |||||||||||||||||||||||    
T  6751878 tgtccgacaccgacacttgtgattacattgaattatgtcattttctcaaaattttatc 6751935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 34595222 - 34595164
Alignment:
Q  127 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 185  Q
    |||||| |||||| |||| |||||||||| |||||||||||||||||||||| ||||||    
T  34595222 gtgtcccggtgtcagacacgtgtcgtgtccgacaccgacacttgtaattacactgaatt 34595164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 207
Target Start/End: Complemental strand, 19369875 - 19369823
Alignment:
Q  157 gacaccgacacttgtaattacattgaat--tgtcattttctcaaaattttatc 207  Q
    ||||||||||||||| ||||||||||||  |||||||||||||||||||||||    
T  19369875 gacaccgacacttgtgattacattgaattatgtcattttctcaaaattttatc 19369823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 185
Target Start/End: Complemental strand, 28152185 - 28152128
Alignment:
Q  128 tgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 185  Q
    ||||| |||||| |||| |||||||||| |||||||||||||||||||||| ||||||    
T  28152185 tgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactgaatt 28152128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 199
Target Start/End: Complemental strand, 28715383 - 28715309
Alignment:
Q  127 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaa 199  Q
    |||||| ||||||  ||| |||||||||| |||||||||||||||||||||| |||||  ||||||||| |||||    
T  28715383 gtgtcccggtgtcgaacacgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtcattttttcaaa 28715309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 207
Target Start/End: Original strand, 32225361 - 32225443
Alignment:
Q  127 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaaattttatc 207  Q
    |||||| ||||||||||| | |||||||| ||||||||||| ||| |||||||||| |   || |||||||||||||||||||    
T  32225361 gtgtccaggtgtccgacaggggtcgtgtccgacaccgacacctgtgattacattgactcacgttattttctcaaaattttatc 32225443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 195
Target Start/End: Complemental strand, 30851674 - 30851620
Alignment:
Q  141 gacatgtgtcgtgtctgacaccgacacttgtaattacattgaattgtcattttct 195  Q
    |||| |||||||||| ||||||||||| | ||||||||||||||||| |||||||    
T  30851674 gacacgtgtcgtgtccgacaccgacacatataattacattgaattgtgattttct 30851620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 176
Target Start/End: Complemental strand, 4878023 - 4877982
Alignment:
Q  135 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaatta 176  Q
    ||||| ||||||||||||||| ||||||||||||||||||||    
T  4878023 gtgtcggacatgtgtcgtgtccgacaccgacacttgtaatta 4877982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 209
Target Start/End: Original strand, 26402658 - 26402737
Alignment:
Q  134 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtca--ttttctcaaaattttatcat 209  Q
    ||||||| |||||| ||||||| ||||||||||||||| |||||| |||||  |||||  |||| |||||||||||||||    
T  26402658 ggtgtccaacatgtatcgtgtccgacaccgacacttgtgattacactgaattatgtcattttttttcaaaattttatcat 26402737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 16833396 - 16833340
Alignment:
Q  127 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaa 183  Q
    |||||| |||||| |||  ||||||||||| ||||||||||||||||||||| ||||    
T  16833396 gtgtcctggtgtcggacgcgtgtcgtgtctaacaccgacacttgtaattacactgaa 16833340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 173
Target Start/End: Complemental strand, 24645562 - 24645523
Alignment:
Q  134 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaa 173  Q
    |||||| |||| ||||||||||||||||||||||||||||    
T  24645562 ggtgtcggacacgtgtcgtgtctgacaccgacacttgtaa 24645523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 207
Target Start/End: Complemental strand, 10031621 - 10031576
Alignment:
Q  164 acacttgtaattacattgaatt--gtcattttctcaaaattttatc 207  Q
    |||||||| |||||||||||||  ||||||||||||||||||||||    
T  10031621 acacttgtgattacattgaattatgtcattttctcaaaattttatc 10031576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 187
Target Start/End: Original strand, 15489733 - 15489763
Alignment:
Q  157 gacaccgacacttgtaattacattgaattgt 187  Q
    |||||||||||||||||||||||||||||||    
T  15489733 gacaccgacacttgtaattacattgaattgt 15489763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 22746015 - 22745958
Alignment:
Q  157 gacaccgacacttgtaattacattgaattgt--cattttctcaaaattttatcatgtc 212  Q
    ||||||||||||||| ||||||||||| | |  |||||||||||||||||||| ||||    
T  22746015 gacaccgacacttgtgattacattgaaatataacattttctcaaaattttatcgtgtc 22745958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 28077277 - 28077215
Alignment:
Q  3 ggctctgttagataaatatagtggatagttgataagctaccttatagtttatagcggatagct 65  Q
    ||||||||| | |||| |||| |||||||| ||||||||||| |||| ||||||| |||||||    
T  28077277 ggctctgtttggtaaaaatagcggatagtttataagctacctgatagcttatagctgatagct 28077215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 205
Target Start/End: Complemental strand, 7378047 - 7377987
Alignment:
Q  147 tgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaaatttta 205  Q
    ||||||||| ||||||||||| | ||||||||||||||  ||| ||||||||||| |||||    
T  7378047 tgtcgtgtccgacaccgacacatataattacattgaattatgtgattttctcaaattttta 7377987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 185
Target Start/End: Original strand, 7977810 - 7977859
Alignment:
Q  136 tgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 185  Q
    |||| ||||| ||| ||||| |||||||||||||||||||||| ||||||    
T  7977810 tgtcggacatatgttgtgtccgacaccgacacttgtaattacactgaatt 7977859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 185
Target Start/End: Original strand, 27904016 - 27904065
Alignment:
Q  136 tgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 185  Q
    |||| ||| ||| |||||||||||||||||| ||||||||||| ||||||    
T  27904016 tgtcagacttgtctcgtgtctgacaccgacatttgtaattacactgaatt 27904065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 18367927 - 18367895
Alignment:
Q  135 gtgtccgacatgtgtcgtgtctgacaccgacac 167  Q
    ||||| |||||||||||||||||||||||||||    
T  18367927 gtgtcagacatgtgtcgtgtctgacaccgacac 18367895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 185
Target Start/End: Original strand, 45508 - 45559
Alignment:
Q  134 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 185  Q
    |||||| |||| |||||||||| |||||||||||||||||||||| ||||||    
T  45508 ggtgtcagacacgtgtcgtgtccgacaccgacacttgtaattacactgaatt 45559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 178
Target Start/End: Complemental strand, 42893448 - 42893397
Alignment:
Q  127 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattaca 178  Q
    |||||| |||||| |||| |||| ||||||||||||||||||||||||||||    
T  42893448 gtgtcctggtgtcggacacgtgttgtgtctgacaccgacacttgtaattaca 42893397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 15302576 - 15302531
Alignment:
Q  162 cgacacttgtaattacattgaattgtcattttctcaaaattttatc 207  Q
    |||||||||| ||||| ||||||||||||||| |||||||||||||    
T  15302576 cgacacttgtgattaccttgaattgtcattttttcaaaattttatc 15302531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 30080503 - 30080555
Alignment:
Q  158 acaccgacacttgtaattacattgaatt--gtcattttctcaaaattttatca 208  Q
    ||||||| |||||| |||||||||||||  |||||||||||||||||||||||    
T  30080503 acaccgatacttgtgattacattgaattatgtcattttctcaaaattttatca 30080555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 19167571 - 19167607
Alignment:
Q  151 gtgtctgacaccgacacttgtaattacattgaattgt 187  Q
    ||||||||||||||||||||| |||||||||||||||    
T  19167571 gtgtctgacaccgacacttgtgattacattgaattgt 19167607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 185
Target Start/End: Complemental strand, 15884057 - 15884018
Alignment:
Q  146 gtgtcgtgtctgacaccgacacttgtaattacattgaatt 185  Q
    |||||||||| |||||||||||||||||||||| ||||||    
T  15884057 gtgtcgtgtccgacaccgacacttgtaattacactgaatt 15884018  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 199
Target Start/End: Complemental strand, 27932323 - 27932249
Alignment:
Q  127 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaa 199  Q
    |||||| ||||||||||| |||||||||| |||||| | | ||||||||||| |||||  ||| |||||||||||    
T  27932323 gtgtcctggtgtccgacacgtgtcgtgtccgacaccaagatttgtaattacactgaattatgtaattttctcaaa 27932249  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 199
Target Start/End: Original strand, 28588645 - 28588719
Alignment:
Q  127 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaa 199  Q
    |||||| |||||| || |||||||||||| ||||||||||| | |||||||| |||||  ||| |||||||||||    
T  28588645 gtgtcctggtgtcagatatgtgtcgtgtccgacaccgacacctataattacactgaattatgtgattttctcaaa 28588719  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 199
Target Start/End: Original strand, 30502367 - 30502433
Alignment:
Q  135 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt--gtcattttctcaaa 199  Q
    ||||| ||||||||||||||| ||||||||||| | |||||||| ||||||  || |||||||||||    
T  30502367 gtgtcggacatgtgtcgtgtccgacaccgacacatataattacactgaattaagtgattttctcaaa 30502433  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 199
Target Start/End: Original strand, 30542710 - 30542776
Alignment:
Q  135 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt--gtcattttctcaaa 199  Q
    ||||| ||||||||||||||| ||||||||||| | |||||||| ||||||  || |||||||||||    
T  30542710 gtgtcggacatgtgtcgtgtccgacaccgacacatataattacactgaattaagtgattttctcaaa 30542776  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 185
Target Start/End: Original strand, 21191027 - 21191085
Alignment:
Q  127 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 185  Q
    |||||| || ||| |||| |||| ||||| |||||||||||||||||||||| ||||||    
T  21191027 gtgtcccggagtcggacacgtgttgtgtccgacaccgacacttgtaattacactgaatt 21191085  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 185
Target Start/End: Original strand, 21576724 - 21576774
Alignment:
Q  135 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 185  Q
    ||||| |||| |||||||||| |||| ||||||||||||||||| ||||||    
T  21576724 gtgtcagacacgtgtcgtgtccgacatcgacacttgtaattacactgaatt 21576774  T

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Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 22976404 - 22976454
Alignment:
Q  15 taaatatagtggatagttgataagctaccttatagtttatagcggatagct 65  Q
    |||| |||| |||||| |||||||||| ||||||||||||||| |||||||    
T  22976404 taaaaatagcggatagctgataagctagcttatagtttatagctgatagct 22976454  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 33695405 - 33695359
Alignment:
Q  15 taaatatagtggatagttgataagctaccttatagtttatagcggat 61  Q
    |||| |||| ||||||||||||||||| || ||||||||||||||||    
T  33695405 taaaaatagcggatagttgataagctagctgatagtttatagcggat 33695359  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 185
Target Start/End: Original strand, 23012380 - 23012437
Alignment:
Q  128 tgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 185  Q
    ||||| |||||| |||||||||||||||  |||||||||| | |||||||||| ||||    
T  23012380 tgtcccggtgtcagacatgtgtcgtgtccaacaccgacacatataattacattaaatt 23012437  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 185
Target Start/End: Complemental strand, 8420085 - 8420057
Alignment:
Q  157 gacaccgacacttgtaattacattgaatt 185  Q
    |||||||||||||||||||||||||||||    
T  8420085 gacaccgacacttgtaattacattgaatt 8420057  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 204
Target Start/End: Original strand, 16207586 - 16207641
Alignment:
Q  151 gtgtctgacaccgacacttgtaattacattgaat--tgtcattttctcaaaatttt 204  Q
    |||||||||||| |||||||| ||||||||||||  ||||| |||||| |||||||    
T  16207586 gtgtctgacaccaacacttgtgattacattgaattatgtcaatttctctaaatttt 16207641  T

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Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 185
Target Start/End: Complemental strand, 42029826 - 42029782
Alignment:
Q  141 gacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 185  Q
    ||||||||||||||| |||||||| || | |||||||||||||||    
T  42029826 gacatgtgtcgtgtccgacaccgatacatataattacattgaatt 42029782  T

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Target: scaffold0652 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 185
Target Start/End: Original strand, 433 - 491
Alignment:
Q  127 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 185  Q
    |||||| |||||| |||| | |||||||| |||||||||||||||||||||| ||||||    
T  433 gtgtcccggtgtcggacacgcgtcgtgtccgacaccgacacttgtaattacactgaatt 491  T

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Target: scaffold0314 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 156 - 207
Target Start/End: Complemental strand, 9007 - 8954
Alignment:
Q  156 tgacaccgacacttgtaattacattgaatt--gtcattttctcaaaattttatc 207  Q
    |||||||||||||||| ||||| |||||||  ||||||||||||||||||||||    
T  9007 tgacaccgacacttgtgattacgttgaattatgtcattttctcaaaattttatc 8954  T

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Target: scaffold0050 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 185
Target Start/End: Complemental strand, 70365 - 70308
Alignment:
Q  128 tgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattacattgaatt 185  Q
    ||||| |||||| |||| |||||||||| ||||||||||||| |||||||| ||||||    
T  70365 tgtcctggtgtcggacacgtgtcgtgtccgacaccgacacttataattacactgaatt 70308  T

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Target: scaffold0053 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 178
Target Start/End: Complemental strand, 8879 - 8835
Alignment:
Q  134 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattaca 178  Q
    |||||| |||| |||||||||| ||||||||||||||||||||||    
T  8879 ggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattaca 8835  T

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Target: scaffold0512 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 178
Target Start/End: Original strand, 5016 - 5058
Alignment:
Q  136 tgtccgacatgtgtcgtgtctgacaccgacacttgtaattaca 178  Q
    |||| |||| |||||||||| ||||||||||||||||||||||    
T  5016 tgtcggacacgtgtcgtgtccgacaccgacacttgtaattaca 5058  T

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Target: scaffold0697 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 176
Target Start/End: Complemental strand, 1724 - 1683
Alignment:
Q  135 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaatta 176  Q
    ||||| ||||||||||||||| ||||||||||||| ||||||    
T  1724 gtgtcggacatgtgtcgtgtccgacaccgacacttataatta 1683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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