View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9835_low_18 (Length: 243)
Name: NF9835_low_18
Description: NF9835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9835_low_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 36 - 219
Target Start/End: Complemental strand, 35419163 - 35418980
Alignment:
| Q |
36 |
agtaaattagctactgcgcacagaattgtttctctgtcgtctcaagagtaatatattctgtttagatgatgacagtactatagtaggatcaatgttggta |
135 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35419163 |
agtaaattagctactgcgcacagaattttttctctgtcgtctcaagtgtaatatattctgtttagatgatgacagtactatagtaggatcaatgttggta |
35419064 |
T |
|
| Q |
136 |
tcaaaagatatccgacaaaataaatggatggggtgctgtaaaaataaatatataaataaatggacgtggagcaggtaatttgtg |
219 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
35419063 |
tcaaaagatatccgactaaataaatggatggggtgctgtaaaaataaatatataaataaatggacgtgaagcaggtaatttgtg |
35418980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University