View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9835_low_19 (Length: 242)
Name: NF9835_low_19
Description: NF9835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9835_low_19 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 6232588 - 6232828
Alignment:
| Q |
1 |
cttaatgaaacacttttctagaaaatcttttccttcttgtgataattcgtctggaatctttggcaattcttctccaaccccaattcgaatcgtcaacatt |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6232588 |
cttaatgaaacacttttctaaaaaatcttttccttcttgtgataattcctctggaatttttggcaattcttctccaacaccaattcgaatcgtcaacatc |
6232687 |
T |
|
| Q |
101 |
aacatatctgactcattccatgcgg---gttctccggtaatcatctccacgacggcgcaaccaagagcccatatatcggctggcgattcataaacactat |
197 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
6232688 |
aacatatctgattcattccatgcggcgggttctccggtaatcatctccacgacggcgcaaccaagagcccatatatcggctgacgattcatacacactat |
6232787 |
T |
|
| Q |
198 |
cattcactgcttctggtgacataatcatcggagttcctctc |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6232788 |
cattcactgcttctggtgacataatcatcggagttcctctc |
6232828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 139 - 220
Target Start/End: Original strand, 6221953 - 6222034
Alignment:
| Q |
139 |
catctccacgacggcgcaaccaagagcccatatatcggctggcgattcataaacactatcattcactgcttctggtgacata |
220 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||| || || |||||||||||||| || ||||| ||||||||||||||| |
|
|
| T |
6221953 |
catctccacaatagcgcaaccaagagcccatatatctgccggtgattcataaacactctcgttcaccgcttctggtgacata |
6222034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 6221810 - 6221863
Alignment:
| Q |
5 |
atgaaacacttttctagaaaatcttttccttcttgtgataattcgtctggaatc |
58 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
6221810 |
atgaaacacttttcgagaaaatcttttccgacttgtgataattcatctggaatc |
6221863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University