View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9835_low_21 (Length: 239)
Name: NF9835_low_21
Description: NF9835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9835_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 35419399 - 35419191
Alignment:
| Q |
1 |
ataggtatagttagtatttttgttctccacattgtcccttgtcatgtacagcactttgttttaaaggaatatagtaatcaattttgccgaccaaacattc |
100 |
Q |
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| T |
35419399 |
ataggtatagttagtatttttgttctccacattgtcccttgtcatgtacagcactttgttttaaatgaatatagtaatcaattttgccgaccaaacattc |
35419300 |
T |
|
| Q |
101 |
acaggtcaaacgtttgagaca--taaaact---tctaattgaagtacatgtaaaaaactataggtgttatgtttaatttacaaaacattttcataatcag |
195 |
Q |
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||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35419299 |
acaggtcaaacgtttgagacatttataactttatctaattgaagtacatgtaaaaaactataggtgttatgtttaatttacaaaacattttcataatcag |
35419200 |
T |
|
| Q |
196 |
ttataactt |
204 |
Q |
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||||||||| |
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| T |
35419199 |
ttataactt |
35419191 |
T |
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