View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9835_low_22 (Length: 239)
Name: NF9835_low_22
Description: NF9835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9835_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 2940900 - 2940679
Alignment:
| Q |
1 |
ccaattttattacattcaataccatctaaggtaaatctgaccctctcgagcagcatccacatagaaatgtttctccccaagtcgtgtggttgaccagggt |
100 |
Q |
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| T |
2940900 |
ccaattttattacattcaataccatctaaggtaaatctgaccctctcgagcagcatccacatagaaatgtttctccccaagtcgtgtggttgaccagggt |
2940801 |
T |
|
| Q |
101 |
caccctgccaaaagaaaagtctgtaaatattttgtttaagcttgtaaaagttgtggataatgccaaggtatgcaaaatttgttcattgctaatgagagtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2940800 |
caccctgccaaaagaaaagtctgtaaatattttgtttaagcttgtaaaagttgtggataatgccaaggtatgcaaaatttgttcattgctaatgagagtg |
2940701 |
T |
|
| Q |
201 |
atctgtatcaaaaattcattaa |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
2940700 |
atctgtatcaaaaattcattaa |
2940679 |
T |
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