View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9835_low_24 (Length: 232)
Name: NF9835_low_24
Description: NF9835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9835_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 54794507 - 54794723
Alignment:
| Q |
1 |
agctaatagactacagttgaaagtttataaatgaaaagctagttgattgatattcaagtggttgttaaaattaggaagcgagctaactgatcaacataaa |
100 |
Q |
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| T |
54794507 |
agctaatagactatagttgaaagtttataaatgaaaagctagttgattgatattcaagtggttgttaaaattagtaagcgagctaactgatcaacataaa |
54794606 |
T |
|
| Q |
101 |
atgacataaaagatatttgttgtaagctttaccaagagtaaccacaaactagtttacaagtttgtcaaataagataagtctatgtcaaacaaactcaagc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54794607 |
atgacataaaagatatttgttgtaagctttaccaagagtaaccacaaactaatttacaagtttgtcaaataagataagtctatgtcaaacaaactcaagc |
54794706 |
T |
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| Q |
201 |
ttcacacctgacctatg |
217 |
Q |
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||||||||||||||||| |
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| T |
54794707 |
ttcacacctgacctatg |
54794723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 52287205 - 52287320
Alignment:
| Q |
1 |
agctaatagactacagttgaaagtttataaatgaaaagctagttgattgatattcaagtggttgttaaaattaggaagcgagctaactgatcaacataaa |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||| |
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| T |
52287205 |
agctaatggactacagttgaaagtttataaatgaaaagctagttgattgatattcaagtggttgttaaaattagttagcaaactaactgatcaacataaa |
52287304 |
T |
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| Q |
101 |
atgacataaaagatat |
116 |
Q |
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|||||||||||||||| |
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| T |
52287305 |
atgacataaaagatat |
52287320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 124 - 217
Target Start/End: Original strand, 52287391 - 52287484
Alignment:
| Q |
124 |
aagctttaccaagagtaaccacaaactagtttacaagtttgtcaaataagataagtctatgtcaaacaaactcaagcttcacacctgacctatg |
217 |
Q |
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||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
52287391 |
aagctttaccacgagtaaccacaaattagtttacaagtttgtcaaataagataggtctatgtcaaacaaactcaagcttcacacctgacatatg |
52287484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 6 - 116
Target Start/End: Original strand, 802359 - 802468
Alignment:
| Q |
6 |
atagactacagttgaaagtttataaatgaaaagctagttgattgatattcaagtggttgttaaaattaggaagcgagctaactgatcaacataaaatgac |
105 |
Q |
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||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||| ||||||||| ||||| ||||||| |
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| T |
802359 |
atagattatagttgaaagtttataaatgaaaagctagttgattgcaattcaagtggttgttagaattaattggcgaactaactgataaacat-aaatgac |
802457 |
T |
|
| Q |
106 |
ataaaagatat |
116 |
Q |
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|| |||||||| |
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| T |
802458 |
atgaaagatat |
802468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 34618543 - 34618484
Alignment:
| Q |
15 |
agttgaaagtttataaatgaaaagctagttgattgatattcaagtggttgttaaaattag |
74 |
Q |
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||||||||| ||||| |||||| |||||||||||||||| ||||| ||| ||||||||| |
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| T |
34618543 |
agttgaaagcttatagctgaaaaactagttgattgatattaaagtgtttggtaaaattag |
34618484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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