View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9835_low_3 (Length: 492)
Name: NF9835_low_3
Description: NF9835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9835_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 19 - 482
Target Start/End: Original strand, 15435428 - 15435897
Alignment:
| Q |
19 |
tgtcaatcatgcaagcacaaaaacctaaaacgttacaaatggtatgagctttaacagcatgcaaattcctttcttttagtaattttatttgtattattgt |
118 |
Q |
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| T |
15435428 |
tgtcaatcatgcaagcacaaaaacctaaaacgttacaaatggtatgagctttaacagcatgcaaattcctttcttttagtaattttatttgtattattgt |
15435527 |
T |
|
| Q |
119 |
ttttaattatccgattctcaagcaaagggcattggtaatccgaagttcggccagagataaataaagtctagttaagaattgtttcatctaaaaagcaaac |
218 |
Q |
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| T |
15435528 |
ttttaattatccgattctcaaggaaagggcattggtaatccgaagttc-gacaaaggtaaataaagtctggttaaaaattgtttcatccaaaaaataaat |
15435626 |
T |
|
| Q |
219 |
tcggattctcctgaataattcgtcattggtagagttcattaa-------agtccaattatttgatttattaatgagattaaaacgttgtagtaaactagc |
311 |
Q |
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| T |
15435627 |
tcgaattctcctgaataatttgtcattggtagagtccattaatcatttgagtccaattatttgatttattaatgagattaaaatgttgtagtaaactagc |
15435726 |
T |
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| Q |
312 |
cggtattcttctatttaaatatctcaacaannnnnnngggtttaccataatatcagtacgaagtttccaccaccgcttgccagtgactaatttccgtcac |
411 |
Q |
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| T |
15435727 |
cggtattcttcaatttaaacatctcaacaatttttttgggtttaccataatattggtacgaagtttccaccaccgcttgacagtaactaatttccttcac |
15435826 |
T |
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| Q |
412 |
gaaacatctcaaatattttaactcttgttatcatttattttaggatcctctaaggtgcatgataacctttg |
482 |
Q |
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| T |
15435827 |
gaaacatctcaaatattttaactcttgttatcatttattttaggatcctctaaggtgcatgataacctttg |
15435897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 245
Target Start/End: Complemental strand, 20239355 - 20239261
Alignment:
| Q |
151 |
tggtaatccgaagttcggccagagataaataaagtctagttaagaattgtttcatctaaaaagcaaactcggattctcctgaataattcgtcatt |
245 |
Q |
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|||| |||||||||||| | ||| ||| |||||||| || ||||||||||| || | |||| ||||||| |||||| ||||||||| |||||| |
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| T |
20239355 |
tggtgatccgaagttcgtctggaggtaattaaagtctggtcaagaattgttttatttgaaaatcaaactcagattcttttgaataatttgtcatt |
20239261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 245
Target Start/End: Complemental strand, 22133339 - 22133245
Alignment:
| Q |
151 |
tggtaatccgaagttcggccagagataaataaagtctagttaagaattgtttcatctaaaaagcaaactcggattctcctgaataattcgtcatt |
245 |
Q |
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| T |
22133339 |
tggtgatccgaagttcgtctggaggtaattaaagtctggtcaagaattgttttatttgaaaatcaaactcagattcttttgaataatttgtcatt |
22133245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 151 - 242
Target Start/End: Original strand, 10533153 - 10533245
Alignment:
| Q |
151 |
tggtaatccgaagttcggcca-gagataaataaagtctagttaagaattgtttcatctaaaaagcaaactcggattctcctgaataattcgtc |
242 |
Q |
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| T |
10533153 |
tggtaatccggagttcggccaagaggtaagtaaagtctacctaagaattgttcaatctaggaatcgaactgaggttctcctgaataattcgtc |
10533245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 12624374 - 12624406
Alignment:
| Q |
176 |
taaataaagtctagttaagaattgtttcatcta |
208 |
Q |
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| T |
12624374 |
taaataaagtctagtcaagaattgtttcatcta |
12624406 |
T |
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