View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9835_low_4 (Length: 426)
Name: NF9835_low_4
Description: NF9835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9835_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Complemental strand, 26735042 - 26734633
Alignment:
| Q |
1 |
cggaatttctccgagaaactgattggcatcgagtaacagcgtctgcagtgatcggagattcttcatggacgccggaatcctcccggtaaataaattgtta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26735042 |
cggaatttctccgagaaactgattggcatcgagtaacagcgtctgcagtgatcggagattcttcatggacgccggaatcctcccggtaaataaattgtta |
26734943 |
T |
|
| Q |
101 |
gaaagagcgagattcccgagagaattgccagaaatctccgttggtagttggccgttaaaacggttatttccaagctctattatctgtacagaaggcaact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26734942 |
gaaagagcgagattcccgagagaattgccagaaatctccgttggtagttggccgttaaaacggttatttccaagctctattatctgtacagaaggcaact |
26734843 |
T |
|
| Q |
201 |
gaaaaatccccggtgggaccgggccgtccaagtagttattagccactctgattttttcaagtgacttacacgggccaattccgttaggtattggaccgcg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26734842 |
gaaaaatccccggtgggaccgggccgtccaagtagttattagccactctgattttttcaagtgacttacacgggccaattccgttaggtattggaccgcg |
26734743 |
T |
|
| Q |
301 |
gaagaagttgtcagtaacgataaacgttttcaacttctttgatttgcataactccggtgggatcaatccggtgaggtgattcttcgtaacgtcaaagtat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26734742 |
gaagaagttgtcagtaacgataaacgttttcaacttctttgatttgcataactccggtgggatcaatccggtgaggtgattcttcgtaacgtcaaagtat |
26734643 |
T |
|
| Q |
401 |
atgaactttc |
410 |
Q |
| |
|
|||||||||| |
|
|
| T |
26734642 |
atgaactttc |
26734633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 410
Target Start/End: Complemental strand, 26726728 - 26726319
Alignment:
| Q |
1 |
cggaatttctccgagaaactgattggcatcgagtaacagcgtctgcagtgatcggagattcttcatggacgccggaatcctcccggtaaataaattgtta |
100 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
26726728 |
cggaatttctccgacaaactgattggcgtcgagtaacagagtctgcagtgatcggagattcttcatggacgccgaaatcctcccggtaaataaattgtta |
26726629 |
T |
|
| Q |
101 |
gaaagagcgagattcccgagagaattgccagaaatctccgttggtagttggccgttaaaacggttatttccaagctctattatctgtacagaaggcaact |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| || ||| |||||||||||||| |
|
|
| T |
26726628 |
gaaagagcgagaatcccgagagaattgccggaaatctccgatggtagttggccgttaaaacggttatttctaagctccatcatcgttacagaaggcaact |
26726529 |
T |
|
| Q |
201 |
gaaaaatccccggtgggaccgggccgtccaagtagttattagccactctgattttttcaagtgacttacacgggccaattccgttaggtattggaccgcg |
300 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
26726528 |
gaaaaattcccggtgggaccaggccgtccaagtagttattagcgactctgattttttcaagtgacttacacgcaccgattccgttaggtattggaccgct |
26726429 |
T |
|
| Q |
301 |
gaagaagttgtcagtaacgataaacgttttcaacttctttgatttgcataactccggtgggatcaatccggtgaggtgattcttcgtaacgtcaaagtat |
400 |
Q |
| |
|
|| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26726428 |
gagaaagttgtcagaaacgataaacgttttcaacttcttcgatttgcataactccggtgggatcaatccggtgaggtgattcttcgtaacgtcaaagtat |
26726329 |
T |
|
| Q |
401 |
atgaactttc |
410 |
Q |
| |
|
|||||||||| |
|
|
| T |
26726328 |
atgaactttc |
26726319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University