View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9835_low_5 (Length: 344)
Name: NF9835_low_5
Description: NF9835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9835_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 54794333 - 54794006
Alignment:
| Q |
1 |
ttaagctattaactaattagatattagacgtctttcaatataaacctaaattagcatattatttaatgctgcccccgacaagagtctaaaagttgttaca |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
54794333 |
ttaagctattaactaattagatattagacgactttcaatataaacctaaattagtatattatttaatgctgcccctgacaagagtctaaaagttgttaca |
54794234 |
T |
|
| Q |
101 |
tgtgcctatgaatgcaactgggttaccatgtcattctttccaaattactattttagtctgtgaa---atcaatgaaaaatcaatgcaatgctgaacaaga |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
54794233 |
tgtgcctatgaatgcaactgggttaccatgtcattctttccaaattactattttagtatgtgaagctatcaatgaaaaatcaatgcaatgctgaacaaga |
54794134 |
T |
|
| Q |
198 |
gctgagctgaaattctgaaaaataccttttgcctatcctctcttgcgcttaagttgcttcatatgttccacgatataagtaataacttcttttagtgttg |
297 |
Q |
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||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54794133 |
gctcagctgaaattctgaaacatacctttcgcctatcctctcttgcgcttaagttgcttcatatgttccacgatataagtaataacttcttttagtgttg |
54794034 |
T |
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| Q |
298 |
ccttcctctgttccttgaagttccatag |
325 |
Q |
| |
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| T |
54794033 |
ccttcctctgttccttgaagttccatag |
54794006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 322
Target Start/End: Complemental strand, 52287005 - 52286690
Alignment:
| Q |
18 |
tagatattagacgtctttcaatataaacctaaattagcatattatttaat--------gctgcccccgacaagagtctaaaagttgttacatgtgcctat |
109 |
Q |
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| T |
52287005 |
tagatattagacgacttttaatataaacttaaattagtatattatttaattatttaatgctgcacccgacaagagtctaaaagttgttacatgtgcctat |
52286906 |
T |
|
| Q |
110 |
gaatgcaactgggttaccatgtcattctttccaaattactattttagtctgtgaa---atcaatgaaaaatcaatgcaatgctgaacaagagctgagctg |
206 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||| ||| ||||| |
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| T |
52286905 |
gattgcaactgggttaccatgtcattctttccaaattactattttagtccgtgaagctatcaatgaaaaatcaatgcaatgctgaaaaagtgctcagctg |
52286806 |
T |
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| Q |
207 |
aaattctgaaaaataccttttgcctatcctctcttgcgcttaagttgcttcatatgttccacgatataagtaataacttcttttagtgttgccttcctct |
306 |
Q |
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| T |
52286805 |
aaattctgaaacatacctttttcctatcctctcttgcgcttaagttgcttcatatgttccacgatataagtaataacttcttttagtgttgccttcctct |
52286706 |
T |
|
| Q |
307 |
gttccttgaagttcca |
322 |
Q |
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|||||||||||||||| |
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| T |
52286705 |
gttccttgaagttcca |
52286690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 58 - 322
Target Start/End: Complemental strand, 802120 - 801853
Alignment:
| Q |
58 |
attatttaatgctgcccccgacaagagtctaaaagttgttacatgtgcctatgaatgcaactgggttaccatgtcattctttccaaattactattttagt |
157 |
Q |
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|||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| || || |||| ||||||||| |||||||| |
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| T |
802120 |
attatttaatactgcacccgacaagagtctaaaagttgttacatgtgcatatgaatgcaactgggttattatttc--tcttcccaaattaccattttagt |
802023 |
T |
|
| Q |
158 |
ctgtgaa---atcaatgaaaaatcaatgcaatgctgaacaagagctgagctgaaattctgaaaaataccttttgccta---tcctctcttgcgcttaagt |
251 |
Q |
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| T |
802022 |
cagtgaagctatcaatg-aatatccatgcaatgttgaacagaagctccactgaaagtctgaaacataccttttgcctatcctcctcttttgcgcttaagt |
801924 |
T |
|
| Q |
252 |
tgcttcatatgttccacgatataagtaataacttcttttagtgttgccttcctctgttccttgaagttcca |
322 |
Q |
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| T |
801923 |
tgcttcatatgatccacaatataagtgatcacttctttcagtgttgccttcctattttctttgaagttcca |
801853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 238 - 325
Target Start/End: Original strand, 54775541 - 54775633
Alignment:
| Q |
238 |
tcttgcgcttaagttgcttcat-----atgttccacgatataagtaataacttcttttagtgttgccttcctctgttccttgaagttccatag |
325 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54775541 |
tcttgcgcttaagttgcttcatatcatatgttccacgatataagtaataacttcttttagtgttgccttcctctgttccttgaagttccatag |
54775633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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