View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9835_low_6 (Length: 338)
Name: NF9835_low_6
Description: NF9835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9835_low_6 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 26735380 - 26735043
Alignment:
| Q |
1 |
ggatttccggcaaatgaccggtcgttgaagaccaaaaactgaccacctgtggggacaattccggtaaaattgttgtaagataaatccagcgtcgttagac |
100 |
Q |
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| T |
26735380 |
ggatttccggcaaatgaccggtcgttgaagaccaaaaactgaccacctgtggggacaattccggtaaaattgttgtaagataaatccagcgtcgttagac |
26735281 |
T |
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| Q |
101 |
tcgtcatgaatctaatctcatcagggattttcccagatatgttattatgcgaaacattaaaaatgcttagaaccttcagattcttcatccctttaggaac |
200 |
Q |
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| T |
26735280 |
tcgtcatgaatctaatctcatcagggattttcccagatatgctattatgcgaaacattaaaaatgcttagaaccttcagattcttcatccctttaggaac |
26735181 |
T |
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| Q |
201 |
ctcaccggtaagcatgtttcggctgaagtcaactgcagtcagtgaactacattgagtaaccgtctttggaattccaccggtgagattattgccacttata |
300 |
Q |
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| T |
26735180 |
ctcaccggtaagcatgtttcggctgaagtcaactgcagtcagtgaactacattgagtaaccgtctttggaattccaccagtgagattattgccacttatg |
26735081 |
T |
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| Q |
301 |
ttgattctagtcaacaccggtaaagcaaagacctctgc |
338 |
Q |
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| T |
26735080 |
ttgattctagtcaacaccggtaaagcaaagacctctgc |
26735043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 4 - 337
Target Start/End: Complemental strand, 26727063 - 26726730
Alignment:
| Q |
4 |
tttccggcaaatgaccggtcgttgaagaccaaaaactgaccacctgtggggacaattccggtaaaattgttgtaagataaatccagcgtcgttagactcg |
103 |
Q |
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| T |
26727063 |
tttcccgcaaatgaacggtcgttgaagaccaaaaactgaccaccggtggggacaattccggtgaaattgttgtaagataaatccagcgtcgttagactca |
26726964 |
T |
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| Q |
104 |
tcatgaatctaatctcatcagggattttcccagatatgttattatgcgaaacattaaaaatgcttagaaccttcagattcttcatccctttaggaacctc |
203 |
Q |
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| T |
26726963 |
tcatgaatctaatatcattggggatttgccccgatatgctattatgcgaaacattcaaaatgtttagcaccttcagattcttcatccctttaggaacctc |
26726864 |
T |
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| Q |
204 |
accggtaagcatgtttcggctgaagtcaactgcagtcagtgaactacattgagtaaccgtctttggaattccaccggtgagattattgccacttatattg |
303 |
Q |
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| T |
26726863 |
accggtaagcatgtttaggctgaagtcaacggctgtcaatgtactacattgagtaaccgtctttggaattccaccagtgagattgttgccacttatgtta |
26726764 |
T |
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| Q |
304 |
attctagtcaacaccggtaaagcaaagacctctg |
337 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
26726763 |
attctagtcaacaccggtaaagcaaagacctctg |
26726730 |
T |
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