View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9835_low_8 (Length: 316)
Name: NF9835_low_8
Description: NF9835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9835_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 302
Target Start/End: Original strand, 6791714 - 6792015
Alignment:
| Q |
16 |
ataaatagaacttaatccacatcacatgttagagttgataaataa---------------caactaaattttgtcctataaactattatatgttttatgt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
6791714 |
ataaatagaacttaatccacatcacatgttagagttgataaataaacaactaaagaacaacaactaaattttgtcctataaactattatatgttttatgt |
6791813 |
T |
|
| Q |
101 |
agttgagnnnnnnnataccatacctaaacccaggaaaataagcagttctgatagaaagactagcaagatgacaatgttgatcttgtaacttgaaaatctc |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6791814 |
agttgagtttttttataccatacctaaacccaggaaaataagcagttctgatagaaagactagcaagatgacaatgttgatcttgtaacttgaaaatctc |
6791913 |
T |
|
| Q |
201 |
tttcccttcttcatagctacttccaaaagcaactttagatataacatcagctgaaagattttggagatctttattcacatcaatctcaaattcttcaatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
6791914 |
tttcccttcttcatagctacttccaaaagcaactttagatataacatcagctgaaaatttttggagatctttattcacatcaatctcaaattcttcaatg |
6792013 |
T |
|
| Q |
301 |
cc |
302 |
Q |
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|| |
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|
| T |
6792014 |
cc |
6792015 |
T |
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