View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9836_high_11 (Length: 350)
Name: NF9836_high_11
Description: NF9836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9836_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 3 - 249
Target Start/End: Original strand, 31720890 - 31721128
Alignment:
| Q |
3 |
aatagagaaagtgatatgatacatgtgatatgttaatgatgtgataggtaaagagagatgcaaataaaatatggtgttgaataagtgtataaaatttata |
102 |
Q |
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| T |
31720890 |
aatagagaaagtgatatgatagatgtgatatgttaatgatgtgataggtaaagagagatgcaaataaaatatggtgttaaataagtgtataaaatttata |
31720989 |
T |
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| Q |
103 |
gatttttaaatataagagttgaagatnnnnnnnnnnnnnnnggtatcaattgggtcatgaaattgcattatttgacgtcaaggccacatggacacttgca |
202 |
Q |
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| T |
31720990 |
ggttttcaaatataagagttaaagatagaaaaat--------gtatcaattggatcatgaaattgcattttttgacgtcaaggccacatggacacttaca |
31721081 |
T |
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| Q |
203 |
acagtgtcatccatgatttggccctctaaagtgaagttagtaaagtg |
249 |
Q |
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| T |
31721082 |
tcagtttcatccatgatttggccctctaaagtgaagttagtaaagtg |
31721128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 281 - 336
Target Start/End: Original strand, 31721202 - 31721257
Alignment:
| Q |
281 |
actctttaaagtgaattcctcactttagagaagttttatctcatactagcatcacc |
336 |
Q |
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| T |
31721202 |
actctttaaagtgaattcctcattttagagaagttttatctcataatagcatcacc |
31721257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 7573687 - 7573618
Alignment:
| Q |
3 |
aatagagaaagtgatatgatacatgtgatatgttaatgatgtgataggtaaagagagatgcaaataaaat |
72 |
Q |
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| T |
7573687 |
aatagagagggtgatatgatagatgtgatatgttagtgatgtgatgggaagaaagagatacaaagaaaat |
7573618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 34463086 - 34463045
Alignment:
| Q |
6 |
agagaaagtgatatgatacatgtgatatgttaatgatgtgat |
47 |
Q |
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| T |
34463086 |
agagaaagtgatatgatagatgtgatattttgatgatgtgat |
34463045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 29044476 - 29044428
Alignment:
| Q |
1 |
tcaatagagaaagtgatatgatacatgtgatatgttaatgatgtgatag |
49 |
Q |
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| T |
29044476 |
tcaatagagatagtgatatgatagatgtgatatataaattatgtgatag |
29044428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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