View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9836_high_17 (Length: 283)
Name: NF9836_high_17
Description: NF9836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9836_high_17 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 16943452 - 16943170
Alignment:
| Q |
1 |
ccatcccatgaataactacagtccatggattaagcgaagagcagaacaaagaagtcaaatgcgtacagaagcattttaatctcaaacaaatttatatacg |
100 |
Q |
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| T |
16943452 |
ccatcccatgaataactacagtccatgaattaagcgaagagcagaacaaagaagtcaaatgcgtacaaaagcattttaatctcaaacaaatttatatagg |
16943353 |
T |
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| Q |
101 |
aacgaaataatatacaatttcaccacttattgctatcattatcatacatgccttgnnnnnnnccttcttatacacatacaatgtaataatgcacaacaca |
200 |
Q |
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| T |
16943352 |
aacgaaataatatacaatttcaccacttattgctatcattatcatacatgccttgtttttttccttcttatacacctacaatgtaataatgcacaagaca |
16943253 |
T |
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| Q |
201 |
taaacgatcaatcctatagtttcaatataaatttacttaagnnnnnnntcacttatatttcacgcgtccaatatagggctttt |
283 |
Q |
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| T |
16943252 |
taaacgatcaatcctatagtttcaatataaatttactaaagaaaaaaatcacttatatttcacgcgtccaatatagggctttt |
16943170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 17014117 - 17013835
Alignment:
| Q |
1 |
ccatcccatgaataactacagtccatggattaagcgaagagcagaacaaagaagtcaaatgcgtacagaagcattttaatctcaaacaaatttatatacg |
100 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |
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| T |
17014117 |
ccatcccatgaataactacagtccatgaattaagcgaagagcagaacaaagaagtcaaatgcgtacaaaagcattttaatctcaaacaaatttatatagg |
17014018 |
T |
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| Q |
101 |
aacgaaataatatacaatttcaccacttattgctatcattatcatacatgccttgnnnnnnnccttcttatacacatacaatgtaataatgcacaacaca |
200 |
Q |
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| T |
17014017 |
aacgaaataatatacaatttcaccacttattgctatcattatcatacatgccttgtttttttccttcttatacacctacaatgtaataatgcacaagaca |
17013918 |
T |
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| Q |
201 |
taaacgatcaatcctatagtttcaatataaatttacttaagnnnnnnntcacttatatttcacgcgtccaatatagggctttt |
283 |
Q |
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| T |
17013917 |
taaacgatcaatcctatagtttcaatataaatttactaaagaaaaaaatcacttatatttcacgcgtccaatatagggctttt |
17013835 |
T |
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