View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9836_high_25 (Length: 246)
Name: NF9836_high_25
Description: NF9836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9836_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 28 - 232
Target Start/End: Original strand, 49765214 - 49765419
Alignment:
| Q |
28 |
tcatcaacaacttattaaattgcatataaactcaatgatacaagccaaaagtgattctatgtaggtactccgtattgtctctacactacccaaacatgtg |
127 |
Q |
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| T |
49765214 |
tcatcaacaacttattaaattgcatataaactcaatgatacaagccaaaagtgattctatgtaggtactccgtattgtctctacactacccaaacatgtg |
49765313 |
T |
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| Q |
128 |
tatgcatgtgaacaccaccatgaccatagtgtgcattacaataaggtagctac-aaaaaatactacaaccaatgtcatagtagtaattaagacaagccac |
226 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49765314 |
tatgcatgtgaacaccaccatgaccatagtgtgcattacaataaggtagctacaaaaaaatactacaaccaatgtcatagtagtaattaagacaagccac |
49765413 |
T |
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| Q |
227 |
gtgatg |
232 |
Q |
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|||||| |
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| T |
49765414 |
gtgatg |
49765419 |
T |
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