View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9836_high_30 (Length: 241)
Name: NF9836_high_30
Description: NF9836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9836_high_30 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 4 - 223
Target Start/End: Complemental strand, 33625534 - 33625319
Alignment:
| Q |
4 |
gattccttttgagaattttctcttgtttccaacctctaagctttcaaattcaatttttctcatggtactaagaattctaatagttaca-agtcaagtttt |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||| ||||||||||| |
|
|
| T |
33625534 |
gattccttttgagaattttctcttgtttccaacctctaagcttccaaattcaatttttctcatggtactaagaattctatttgttacagagtcaagtttt |
33625435 |
T |
|
| Q |
103 |
taccactaaactaaactgacctacctacctatttgacaaatttaattgtaaactacttttaaagttacacatacaaaaatttgtagtttatttaccgttt |
202 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33625434 |
taccactaaact-----gacctacctaccaatttgacaaatttaattgtaaactacttttaaagttacacatacaaaaatttgtagtttatttaccgttt |
33625340 |
T |
|
| Q |
203 |
attaaattttaactcaacgtt |
223 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
33625339 |
attaaattttaactcaacgtt |
33625319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University