View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9836_high_35 (Length: 233)
Name: NF9836_high_35
Description: NF9836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9836_high_35 |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 36 - 215
Target Start/End: Original strand, 26736624 - 26736803
Alignment:
| Q |
36 |
agcctctcgacaacttgactcatggtgggtctaacatctttatcttcctgtacacaatccaatgcaacatttgccaaagtttccattctctttgcatcat |
135 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26736624 |
agcctctcaacaacttgactcatggtgggtctaacatctttatcttcctgtacacaatccaatgcaacatttgccaaagtttccattctctttgcatcat |
26736723 |
T |
|
| Q |
136 |
aatttgatcccaatgcagggtcaacaatttcttcaacccaacaaccaacttctaatccttttcttcttttctctctaacc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||| |||||| |
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| T |
26736724 |
aatttgatcccaatgcagggtcaacaatttcttcaacccaacaagcaacttctagtacttttcttcttttctccctaacc |
26736803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 36 - 215
Target Start/End: Original strand, 26713388 - 26713567
Alignment:
| Q |
36 |
agcctctcgacaacttgactcatggtgggtctaacatctttatcttcctgtacacaatccaatgcaacatttgccaaagtttccattctctttgcatcat |
135 |
Q |
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|||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26713388 |
agcctctcaacaacttgacttatggtgggtctaacatctttctcttcctgtacacaatccaatgcaacatttgccaaagtttccattctctttgcatcat |
26713487 |
T |
|
| Q |
136 |
aatttgatcccaatgcagggtcaacaatttcttcaacccaacaaccaacttctaatccttttcttcttttctctctaacc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||| |||||| |
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| T |
26713488 |
aatttgatcccaatgcagggtcaacaatttcttcaacccaacaaccaacttctagtactttttttcttttctccctaacc |
26713567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 26743616 - 26743814
Alignment:
| Q |
17 |
attatggtcatcccttaatagcctctcgacaacttgactcatggtgggtctaacatctttatcttcctgtacacaatccaatgcaacatttgccaaagtt |
116 |
Q |
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| T |
26743616 |
attatgctcatcccttaatagcctctcaacaacttgactcatggtgggtctaacatctttctcttcctttacacaatccaaagcaacatctgccaaagtc |
26743715 |
T |
|
| Q |
117 |
tccattctctttgcatcataatttgatcccaatgcagggtcaacaatttcttcaacccaacaaccaacttctaatccttttcttcttttctctctaacc |
215 |
Q |
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||||| ||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26743716 |
tccatcttctttacatcataatttgatcccaatttagggtcaacaatttgctcaacccaacaaccaacttctaatccttttcttcttttctccctaacc |
26743814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 20 - 215
Target Start/End: Original strand, 26750544 - 26750739
Alignment:
| Q |
20 |
atggtcatcccttaatagcctctcgacaacttgactcatggtgggtctaacatctttatcttcctgtacacaatccaatgcaacatttgccaaagtttcc |
119 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||| || ||| |
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| T |
26750544 |
atggtcatcccttaatagcctctcaacaacttgactcatggtaggtctaacatctttatcttcttgtacacaatccaaagcaacatttgccaatgtctcc |
26750643 |
T |
|
| Q |
120 |
attctctttgcatcataatttgatcccaatgcagggtcaacaatttcttcaacccaacaaccaacttctaatccttttcttcttttctctctaacc |
215 |
Q |
| |
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|| ||||| |||||||||||||||||||| ||||| ||||||| | | ||||||||||||||||||| ||||||||||||||| || |||||| |
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| T |
26750644 |
atcttctttacatcataatttgatcccaattttgggtctacaatttgtgccacccaacaaccaacttctactccttttcttcttttttccctaacc |
26750739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 36 - 224
Target Start/End: Original strand, 26733399 - 26733587
Alignment:
| Q |
36 |
agcctctcgacaacttgactcatggtgggtctaacatctttatcttcctgtacacaatccaatgcaacatttgccaaagtttccattctctttgcatcat |
135 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26733399 |
agcctctcaacaacttgactcatggtgggtctaacatctttctcttcagccacacaatccaaagcaacatttgccaaagtttccattctctttgcatcat |
26733498 |
T |
|
| Q |
136 |
aatttgatcccaatgcagggtcaacaatttcttcaacccaacaaccaacttctaatccttttcttcttttctctctaacctatgcttct |
224 |
Q |
| |
|
|||||||||||||| ||||||| ||||||| |||||||||||||||| || |||||||||||||||| || |||||| ||| |||| |
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| T |
26733499 |
aatttgatcccaatttagggtcagcaatttcctcaacccaacaaccaaatttagatccttttcttcttttttccctaacccatgtttct |
26733587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 36 - 215
Target Start/End: Original strand, 26698236 - 26698415
Alignment:
| Q |
36 |
agcctctcgacaacttgactcatggtgggtctaacatctttatcttcctgtacacaatccaatgcaacatttgccaaagtttccattctctttgcatcat |
135 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26698236 |
agcctctcaacaacttgactcatggtgggtctaacatctttctcttcagacacacaatccaaagcaacatttgccaaagtttccattctctttgcatcat |
26698335 |
T |
|
| Q |
136 |
aatttgatcccaatgcagggtcaacaatttcttcaacccaacaaccaacttctaatccttttcttcttttctctctaacc |
215 |
Q |
| |
|
|||||||||||||| ||||||| ||||||| |||||||||||||||| || |||||||||| ||||| || |||||| |
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| T |
26698336 |
aatttgatcccaatttagggtcagcaatttcctcaacccaacaaccaaatttagatccttttctacttttttccctaacc |
26698415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 36 - 140
Target Start/End: Original strand, 26691986 - 26692090
Alignment:
| Q |
36 |
agcctctcgacaacttgactcatggtgggtctaacatctttatcttcctgtacacaatccaatgcaacatttgccaaagtttccattctctttgcatcat |
135 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
26691986 |
agcctctcaacaacttgactcatggtaggtctaacatctttttcttcagccacacaatccaaagcaacatttgtcaaagtttccattctctttgcatcat |
26692085 |
T |
|
| Q |
136 |
aattt |
140 |
Q |
| |
|
||||| |
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|
| T |
26692086 |
aattt |
26692090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 36 - 209
Target Start/End: Original strand, 26675021 - 26675194
Alignment:
| Q |
36 |
agcctctcgacaacttgactcatggtgggtctaacatctttatcttcctgtacacaatccaatgcaacatttgccaaagt-ttccatt-ctctttgcatc |
133 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |||| || |||||||||||| || || |||||| || ||| ||| | || || |
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| T |
26675021 |
agcctctcaacaacttgactcatggtgggtctaacatctttctctttctctacacaatccaaagccaccactgccaaggtcttcaattgaacaatg--tc |
26675118 |
T |
|
| Q |
134 |
ataatttgatcccaatgcagggtcaacaatttcttcaacccaacaaccaacttctaatccttttcttcttttctct |
209 |
Q |
| |
|
||||||| ||||||||||||||||||| |||| ||||| |||||| || |||||| || |||| |||||||||||| |
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|
| T |
26675119 |
ataatttaatcccaatgcagggtcaactatttgttcaatccaacatcccacttctgattctttccttcttttctct |
26675194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 178
Target Start/End: Original strand, 18658185 - 18658297
Alignment:
| Q |
66 |
ctaacatctttatcttcctgtacacaatccaatgcaacatttgccaaagtttccattctctttgcatcataatttgatcccaatgcagggtcaacaattt |
165 |
Q |
| |
|
|||| |||| ||||||||| |||||||||||| ||||| || |||||| |||||| | ||| |||| |||| | |||| |||||| || | ||||| |
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|
| T |
18658185 |
ctaatatctctatcttcctctacacaatccaaagcaactttagccaaaacttccatcttatttaaatcacaattggtccccattgcaggatccataattt |
18658284 |
T |
|
| Q |
166 |
cttcaacccaaca |
178 |
Q |
| |
|
||||||||||||| |
|
|
| T |
18658285 |
cttcaacccaaca |
18658297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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