View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9836_high_5 (Length: 421)
Name: NF9836_high_5
Description: NF9836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9836_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 16 - 403
Target Start/End: Original strand, 37711756 - 37712143
Alignment:
| Q |
16 |
agagactctagggtgagggtgttgaattgatttaagagttgtaatatgactaacgcttgaagaaaaagagatatttaacaaggaatgaattgtgagtggt |
115 |
Q |
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| T |
37711756 |
agagactctagggtgagggtgttgaattgatttaagagttgtaatatgactaacgcttgaagaaaaagagatatttaacaaggaatgaattgtgagtggt |
37711855 |
T |
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| Q |
116 |
agataaagaaaataaatgatgattgtaggttatggacataaggagggcattatatataattaagtaaacatcaaagggtttttgaaactttggtaaatgt |
215 |
Q |
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| T |
37711856 |
agataaagaaaataaatgatgattgtaggttatggacataaggagggcattatatataattaagtaaacatcaaagggtttttgaaactttggtaaatgt |
37711955 |
T |
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| Q |
216 |
ttgtgtagaaacttaagttggtgatgtttgtgtagaaactcaaatttgcataattattagatttaattcactattcagttggtgtaaagagtttttaaac |
315 |
Q |
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| T |
37711956 |
ttgtgtagaaacttaagttggtgatgtttgtgtagaaactcaaatttgcataattattagatttaattcactattcagttggtgtaaagagtttttaaac |
37712055 |
T |
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| Q |
316 |
tcttaatcggtcatattattgaaaatgnnnnnnnnnnnnnnnnnnactatagcaatttccaaaatttcacacattagttgtgtgatgt |
403 |
Q |
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| T |
37712056 |
tcttaatcggtcatattattgaaaatgttttgatttttattttttactatagcaatttccaaaatttcacacattagttgtgtgatgt |
37712143 |
T |
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