View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9836_low_1 (Length: 709)
Name: NF9836_low_1
Description: NF9836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9836_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 498 - 701
Target Start/End: Complemental strand, 3144501 - 3144298
Alignment:
| Q |
498 |
cgtgttaaggtaatgaaggaaatgaatgcagttaataatgttagttggtgaatgaagtcagaaataatagagaaagtgaagaagagagagtaatggtcgc |
597 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3144501 |
cgtgttaaggtaatgaaggaaatgaatgcagttaataatgtaagttggtgaatgaagtcagaaataatagagaaagtgaagaagagagagtaatggtcgc |
3144402 |
T |
|
| Q |
598 |
cgccttatttgcttaaaaccaagtccaagatgagttaagattatggttggggcgcaaatctcaaaagagtgaatgagagaggtctgtactctgtggtctc |
697 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3144401 |
cgccttatttgcttaaaactaagtccaagatgagttaagattatggttggggcgcaaatctcaaaagagtgaatgagagaggtctgtactctgtggtctc |
3144302 |
T |
|
| Q |
698 |
tgct |
701 |
Q |
| |
|
|||| |
|
|
| T |
3144301 |
tgct |
3144298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 3144944 - 3144802
Alignment:
| Q |
18 |
agaatcaaggtgaaccaccccgtagcttctgcaaaatcacggttgttcaccgtgattcaagtgataccaaacatgcatagaagaatcaagcggttactag |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3144944 |
agaatcaaggtgaaccaccccgtagcttctgcaaaatcacggttgttcaccgtgatttaagtgataccaaacatgcatagaagaatcaagcggttactag |
3144845 |
T |
|
| Q |
118 |
cagtgactcatcaaacaccaaaactatttcggtttatattcag |
160 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3144844 |
cagtgactcatcaaacaccaaaactatttcggtttatattcag |
3144802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 303 - 448
Target Start/End: Complemental strand, 3144694 - 3144550
Alignment:
| Q |
303 |
taacctgacaaacttgccatcagattgaagtgcatcaggctttgaacccaacttcataaacttcannnnnnnnnnnnnnnnnncttgaaaaccaaacaaa |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3144694 |
taacctgacaaacttgccatcagattgaagtgcatcaggctttgaacccaacttcataaacttca-tttttgtttctttttttcttgaaaaccaaacaaa |
3144596 |
T |
|
| Q |
403 |
gaaagtagggtcacgtatgttgagaagtaagacggtgaaagaaagc |
448 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
3144595 |
gaaagtaggatcacgtatgttgagaagtaagacagtgaaagaaagc |
3144550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University