View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9836_low_10 (Length: 490)
Name: NF9836_low_10
Description: NF9836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9836_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 437; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 20 - 480
Target Start/End: Complemental strand, 7755819 - 7755361
Alignment:
| Q |
20 |
ttcagagacgaccaaaacctcaagatcggccatgaaatcggaccttcactcctacaagcaatcgaagcttctagaatctcaatcgttgtgctgtgtaaag |
119 |
Q |
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| T |
7755819 |
ttcagagacgaccaaaacctcaagatcggccatgaaatcggaccttcactcctacaagcaatcgaagcttctagaatctcaatcgttgtgctgtgtaaag |
7755720 |
T |
|
| Q |
120 |
actatgcttcttcaacttggtgccttgatgaacttgttaagatcgttgactgttatgaaaataatggaaaatcggttttcgttatattttataagatgga |
219 |
Q |
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| T |
7755719 |
aatatgcttcttcaacttggtgccttgatgaacttgttaagatcgttgactgttatgaaaataatggaaaatcggttttcgttatattt-ata-gatgga |
7755622 |
T |
|
| Q |
220 |
acctagcgatgttaggtatcagaaaaatagttatgaagatgctattaggaaacatgaaaagagatttggaagggaatcggagaaggtgaaagcatggaag |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7755621 |
acctagcgatgttaggtatcagaaaaatagttatgaagatgctattaggaaacatgaaaagagatttggaagggaatcggagaaggtgaaagcatggaag |
7755522 |
T |
|
| Q |
320 |
ttggctttgaatcgagtttgtgctctcagtggattacattgcaaggacgatgtgtaagtccccaaacatttaactaattataaggaaaatgacttgtaaa |
419 |
Q |
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| T |
7755521 |
ttggctttgaatcgagtttgtgctctcagtggattacattgcaaggacgatgtgtaagtccccaaacatttaactaattataaggaaaatgacttgtaaa |
7755422 |
T |
|
| Q |
420 |
ctatcatctctctcagattctctcttttttagttgaatcattttctcctcgcgctcctttg |
480 |
Q |
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| T |
7755421 |
ctatcaactctctcagattctctcttttttagttgaatcattttctcctcgcgctcctttg |
7755361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 20 - 400
Target Start/End: Complemental strand, 7763275 - 7762894
Alignment:
| Q |
20 |
ttcagagacgaccaaaacctcaagatcggccatgaaatcggaccttcactcctacaagcaatcgaagcttctagaatctcaatcgttgtgctgtgtaaag |
119 |
Q |
| |
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||||||||||| |||||| |||| ||||| ||||||||||| ||||||| ||| ||||||| ||||||||||||||||||||||||||| |||| | |
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| T |
7763275 |
ttcagagacgatcaaaacatcaacatcggtgatgaaatcggaacttcacttctaaaagcaattgaagcttctagaatctcaatcgttgtgttgtgccgtg |
7763176 |
T |
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| Q |
120 |
actatgcttcttcaacttggtgccttgatgaacttgttaagatcgttgactgttatgaaaataatggaaaatcggttttcgttatattttataagatgga |
219 |
Q |
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| T |
7763175 |
attatgcttcttccacttggtgccttgatgaactagtcaagatcgttgactgttatgacaaaaatagaaaatcagtatttgttattttttataagataga |
7763076 |
T |
|
| Q |
220 |
acctagcgatgttaggta-tcagaaaaatagttatgaagatgctattaggaaacatgaaaagagatttggaagggaatcggagaaggtgaaagcatggaa |
318 |
Q |
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| T |
7763075 |
accttcagatgttaggtagtcagaggaatagttatgaaattgcaatgatgaaacatgaaaatagatttggaaaggaatcggagaaggtgaaagcatggag |
7762976 |
T |
|
| Q |
319 |
gttggctttgaatcgagtttgtgctctcagtggattacattgcaaggacgatgtgtaagtccccaaacatttaactaattat |
400 |
Q |
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| T |
7762975 |
gttggctttgaatcgtgtttgtgctctcagtggattacattgcaaagataatatgtaagttctcaaaccattaattaattat |
7762894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 20 - 378
Target Start/End: Complemental strand, 7839946 - 7839585
Alignment:
| Q |
20 |
ttcagagacgaccaaaacctcaagatcggccatgaaatcggaccttcactcctacaagcaatcgaagcttctagaatctcaatcgttgtgctgtgtaaag |
119 |
Q |
| |
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||||||||| | | |||||| || |||||| | |||||| ||| |||||| |||||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
7839946 |
ttcagagacaatccaaaccttaacatcggcgacgaaatcagactttcacttctacaagcaatcgaagcttctagaatttcaatcgttgttctgtgtaaag |
7839847 |
T |
|
| Q |
120 |
actatgcttcttcaacttggtgccttgatgaacttgttaagatcgttgactgt---tatgaaaataatggaaaatcggttttcgttatattttataagat |
216 |
Q |
| |
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|||| |||||||| |||||||||||||| |||||||||||||||||||||||| || || | || || ||| | ||||| ||||||||||||||| | |
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| T |
7839846 |
actacgcttcttccacttggtgccttgacgaacttgttaagatcgttgactgttactacgagatgaaagggaaaactgtttttgttatattttataaggt |
7839747 |
T |
|
| Q |
217 |
ggaacctagcgatgttaggtatcagaaaaatagttatgaagatgctattaggaaacatgaaaagagatttggaagggaatcggagaaggtgaaagcatgg |
316 |
Q |
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|||| || |||||||| |||||| ||| || |||||| ||| || | ||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
7839746 |
ggaagcttctgatgttagacatcagagaaagagctatgaaattgcaatgattcaacatgaaaagagatttggaaaggaatcggagaaggtgaagaaatgg |
7839647 |
T |
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| Q |
317 |
aagttggctttgaatcgagtttgtgctctcagtggattacattgcaaggacgatgtgtaagt |
378 |
Q |
| |
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| || |||||||| ||||||||||||| |||||| || | | |||||||||| ||||||| |
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| T |
7839646 |
aggtctgctttgaaaagagtttgtgctcttagtggactatactacaaggacgatatgtaagt |
7839585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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