View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9836_low_11 (Length: 460)

Name: NF9836_low_11
Description: NF9836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9836_low_11
NF9836_low_11
[»] chr7 (10 HSPs)
chr7 (97-443)||(11266852-11267194)
chr7 (312-437)||(11296068-11296193)
chr7 (161-271)||(11243784-11243893)
chr7 (182-280)||(11295178-11295277)
chr7 (40-96)||(12961984-12962040)
chr7 (38-99)||(35080280-35080341)
chr7 (97-125)||(11253755-11253783)
chr7 (97-125)||(11256260-11256288)
chr7 (97-125)||(11258766-11258794)
chr7 (97-125)||(11261272-11261300)
[»] chr5 (12 HSPs)
chr5 (316-443)||(5781805-5781932)
chr5 (316-443)||(19069323-19069450)
chr5 (14-96)||(14190463-14190545)
chr5 (38-97)||(14189663-14189722)
chr5 (38-96)||(24242017-24242075)
chr5 (47-99)||(17415698-17415750)
chr5 (40-96)||(8061856-8061912)
chr5 (40-98)||(17414542-17414600)
chr5 (40-96)||(8067452-8067508)
chr5 (325-409)||(39325012-39325096)
chr5 (39-87)||(3333701-3333749)
chr5 (39-87)||(36798433-36798481)
[»] chr4 (14 HSPs)
chr4 (14-99)||(48157654-48157739)
chr4 (14-97)||(9178634-9178717)
chr4 (40-95)||(40169781-40169836)
chr4 (313-419)||(8667722-8667828)
chr4 (38-96)||(48157120-48157178)
chr4 (40-96)||(40168639-40168695)
chr4 (38-93)||(9180670-9180725)
chr4 (48-97)||(55986319-55986368)
chr4 (370-419)||(33041344-33041393)
chr4 (48-93)||(55984768-55984813)
chr4 (39-83)||(23759830-23759874)
chr4 (39-87)||(11824197-11824245)
chr4 (43-87)||(29697782-29697826)
chr4 (38-98)||(33997896-33997956)
[»] chr1 (6 HSPs)
chr1 (38-96)||(50379972-50380030)
chr1 (40-96)||(46313276-46313332)
chr1 (368-443)||(1624793-1624868)
chr1 (328-409)||(2583343-2583424)
chr1 (38-96)||(46312065-46312123)
chr1 (38-99)||(2999488-2999549)
[»] chr6 (9 HSPs)
chr6 (356-441)||(11776136-11776221)
chr6 (40-96)||(20409067-20409123)
chr6 (332-432)||(3056196-3056296)
chr6 (40-96)||(16864494-16864550)
chr6 (47-98)||(6978146-6978197)
chr6 (40-96)||(6977027-6977083)
chr6 (48-96)||(20410227-20410275)
chr6 (48-96)||(16859336-16859384)
chr6 (39-87)||(12766471-12766519)
[»] chr2 (7 HSPs)
chr2 (40-96)||(45413479-45413535)
chr2 (40-98)||(1389231-1389289)
chr2 (48-96)||(45412335-45412383)
chr2 (48-99)||(28851682-28851733)
chr2 (40-93)||(28847336-28847389)
chr2 (40-96)||(1394856-1394912)
chr2 (39-87)||(5470592-5470640)
[»] scaffold0015 (1 HSPs)
scaffold0015 (324-406)||(2750-2832)
[»] chr8 (8 HSPs)
chr8 (40-96)||(38612219-38612275)
chr8 (40-96)||(38613419-38613475)
chr8 (40-96)||(23039529-23039585)
chr8 (325-409)||(23594610-23594694)
chr8 (325-409)||(23603532-23603616)
chr8 (328-377)||(14412615-14412664)
chr8 (39-87)||(16982635-16982683)
chr8 (40-96)||(23039124-23039180)
[»] chr3 (4 HSPs)
chr3 (40-96)||(54539109-54539165)
chr3 (40-93)||(48053129-48053182)
chr3 (40-96)||(54539500-54539556)
chr3 (64-99)||(48060806-48060841)
[»] scaffold0363 (1 HSPs)
scaffold0363 (328-377)||(6047-6096)


Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 97 - 443
Target Start/End: Complemental strand, 11267194 - 11266852
Alignment:
Q  97 aaacttaaattgcaacaagcgtgtagttannnnnnnncaaaatacatcataagcaaacacgtagtagttatctcctatacatatgaaccaactgaatggc 196  Q
    |||||||||||||||||||| ||||||||        ||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||    
T  11267194 aaacttaaattgcaacaagcatgtagttattttttt-caaaatacatcataagcaaacacgtagt---tatctcctatacatatgaaccaactgaatggc 11267099  T
Q  197 caaatccacatggtaatatccaatctctcatnnnnnnnntgacacatgtcatttcattctacttaacatacaaacaattgtcctnnnnnnnntacaacca 296  Q
    |||||||||||||||||||||||||||||||        ||||||||||||||||||| |||||||||||||||||||||||||        ||||||||    
T  11267098 caaatccacatggtaatatccaatctctcataaaaaaaatgacacatgtcatttcattgtacttaacatacaaacaattgtcctaaaaaaaatacaacca 11266999  T
Q  297 agtcattaaaataattgcgtgaaccggaatgcacgtcaacgtgctcaacaaccgtattcgtctgaacctcaaccgattctacaaacacctcatgtacctc 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11266998 agtcattaaaataattgcgtgaaccggaatgcacgtcaacgtgctcaacaaccgtattcgtctgaacctcaaccgattctacaaacacctcatgtacctc 11266899  T
Q  397 aatgtgctcaacatgggatgaatatcatacacactcatgggaaccct 443  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||    
T  11266898 aatgtgatcaacatgggatgaatatcatacacactcatgggaaccct 11266852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 312 - 437
Target Start/End: Original strand, 11296068 - 11296193
Alignment:
Q  312 tgcgtgaaccggaatgcacgtcaacgtgctcaacaaccgtattcgtctgaacctcaaccgattctacaaacacctcatgtacctcaatgtgctcaacatg 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||      
T  11296068 tgcgtgaaccggaatgcacgtcaacgtgctcaacaaccgtattcgtctgaacctcaaccaattctacaaacacctcatgtacctcaatgtgctcaacaaa 11296167  T
Q  412 ggatgaatatcatacacactcatggg 437  Q
    |||||||| | |||||  ||||||||    
T  11296168 ggatgaatgtgatacatgctcatggg 11296193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 161 - 271
Target Start/End: Original strand, 11243784 - 11243893
Alignment:
Q  161 tagttatctcctatacatatgaaccaactgaatggccaaatccacatggtaatatccaatctctcatnnnnnnnntgacacatgtcatttcattctactt 260  Q
    ||||||||||||||| |||| |||||||| ||||||||||||||||||||||| ||| || ||| ||        ||||||||| ||||||||| |||||    
T  11243784 tagttatctcctatatatataaaccaactaaatggccaaatccacatggtaatctcctatttcttat-agaaaaatgacacatgacatttcattgtactt 11243882  T
Q  261 aacatacaaac 271  Q
    |||||||||||    
T  11243883 aacatacaaac 11243893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 182 - 280
Target Start/End: Original strand, 11295178 - 11295277
Alignment:
Q  182 aaccaactgaatggccaaatccacatggtaatatccaatctctca-tnnnnnnnntgacacatgtcatttcattctacttaacatacaaa-caattgtcc 279  Q
    ||||||||||||||||||||||||||| |||||||| |||||||| |        ||||||||||||||||||| ||||| ||||||||| |||||||||    
T  11295178 aaccaactgaatggccaaatccacatgataatatcctatctctcattaaaaaaaatgacacatgtcatttcattgtactt-acatacaaaccaattgtcc 11295276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 12962040 - 12961984
Alignment:
Q  40 taggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagcc 96  Q
    |||||| ||||||||||||| || ||||||||||||||| |||||||||||||||||    
T  12962040 tagggggccaaaatcgcaccattgtgaaagttagggggttaaaactgcagtttagcc 12961984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 38 - 99
Target Start/End: Complemental strand, 35080341 - 35080280
Alignment:
Q  38 attaggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagccaaa 99  Q
    |||||||||||||||||||| | ||   ||| ||||||||||||||||| ||||||||||||    
T  35080341 attaggggaccaaaatcgcaacattggcaaacttagggggtcaaaactgtagtttagccaaa 35080280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 125
Target Start/End: Complemental strand, 11253783 - 11253755
Alignment:
Q  97 aaacttaaattgcaacaagcgtgtagtta 125  Q
    |||||||||||||||||||||||||||||    
T  11253783 aaacttaaattgcaacaagcgtgtagtta 11253755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 125
Target Start/End: Complemental strand, 11256288 - 11256260
Alignment:
Q  97 aaacttaaattgcaacaagcgtgtagtta 125  Q
    |||||||||||||||||||||||||||||    
T  11256288 aaacttaaattgcaacaagcgtgtagtta 11256260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 125
Target Start/End: Complemental strand, 11258794 - 11258766
Alignment:
Q  97 aaacttaaattgcaacaagcgtgtagtta 125  Q
    |||||||||||||||||||||||||||||    
T  11258794 aaacttaaattgcaacaagcgtgtagtta 11258766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 125
Target Start/End: Complemental strand, 11261300 - 11261272
Alignment:
Q  97 aaacttaaattgcaacaagcgtgtagtta 125  Q
    |||||||||||||||||||||||||||||    
T  11261300 aaacttaaattgcaacaagcgtgtagtta 11261272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 316 - 443
Target Start/End: Original strand, 5781805 - 5781932
Alignment:
Q  316 tgaaccggaatgcacgtcaacgtgctcaacaaccgtattcgtctgaacctcaaccgattctacaaacacctcatgtacctcaatgtgctcaacatgggat 415  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||| | |||||||| |||||||  ||||||| | |||||    
T  5781805 tgaaccggaatgcacgtcaacgtgctcaacaaccatatttgtctgaacctgaaccgattctacagatacctcatgcacctcaaaatgctcaataagggat 5781904  T
Q  416 gaatatcatacacactcatgggaaccct 443  Q
    |||  | |||||| ||||||||||||||    
T  5781905 gaacgtgatacacgctcatgggaaccct 5781932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 316 - 443
Target Start/End: Original strand, 19069323 - 19069450
Alignment:
Q  316 tgaaccggaatgcacgtcaacgtgctcaacaaccgtattcgtctgaacctcaaccgattctacaaacacctcatgtacctcaatgtgctcaacatgggat 415  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||| |||||||||| |||||||  ||||||| | |||||    
T  19069323 tgaaccggaatgcacgtcaacatgctcaacaactgtattcgtctgaacctgaaccgattctacagacacctcatgcacctcaaaatgctcaataggggat 19069422  T
Q  416 gaatatcatacacactcatgggaaccct 443  Q
    |||| | ||| || ||||||| ||||||    
T  19069423 gaatgtgatatacgctcatggaaaccct 19069450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 14190463 - 14190545
Alignment:
Q  14 aggggtttaaattgtaannnnnnnattaggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagcc 96  Q
    |||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14190463 aggggtttaaattgtaatttttttattaggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagcc 14190545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 14189722 - 14189663
Alignment:
Q  38 attaggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagcca 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14189722 attaggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagcca 14189663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 38 - 96
Target Start/End: Complemental strand, 24242075 - 24242017
Alignment:
Q  38 attaggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagcc 96  Q
    ||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  24242075 attagggggtcaaaatcgcacctttgtgaaagttagggggtcaaaactgcagtttagcc 24242017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 17415698 - 17415750
Alignment:
Q  47 ccaaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagccaaa 99  Q
    ||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  17415698 ccaaaatcgcaccattgtgaaagttagggggtcaaaactgcagtttagccaaa 17415750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 8061912 - 8061856
Alignment:
Q  40 taggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagcc 96  Q
    |||||| ||||||||||||| || ||||||||||||||| |||||||||||||||||    
T  8061912 tagggggccaaaatcgcaccattctgaaagttagggggttaaaactgcagtttagcc 8061856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 40 - 98
Target Start/End: Complemental strand, 17414600 - 17414542
Alignment:
Q  40 taggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagccaa 98  Q
    |||||| ||||||||||||| || | |||||||| ||||||||||||||||||||||||    
T  17414600 tagggggccaaaatcgcaccattgtaaaagttagagggtcaaaactgcagtttagccaa 17414542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 8067452 - 8067508
Alignment:
Q  40 taggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagcc 96  Q
    |||||| ||||||||||||| || ||||||||||||||  |||||||||||||||||    
T  8067452 tagggggccaaaatcgcaccattctgaaagttaggggggtaaaactgcagtttagcc 8067508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 409
Target Start/End: Original strand, 39325012 - 39325096
Alignment:
Q  325 atgcacgtcaacgtgctcaacaaccgtattcgtctgaacctcaaccgattctacaaacacctcatgtacctcaatgtgctcaaca 409  Q
    |||||||||| ||||||||||||| |||| | |||||||||  ||||||||||||||| | ||||| |||||   ||||||||||    
T  39325012 atgcacgtcatcgtgctcaacaacagtatccatctgaacctgcaccgattctacaaacccttcatgcacctcttggtgctcaaca 39325096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 3333749 - 3333701
Alignment:
Q  39 ttaggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgc 87  Q
    |||||||| |||||||||| ||| |||||||||||||||  ||||||||    
T  3333749 ttaggggatcaaaatcgcaacttcatgaaagttagggggcgaaaactgc 3333701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 36798433 - 36798481
Alignment:
Q  39 ttaggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgc 87  Q
    ||||||||||||||||||| ||||  |||||||||||||  ||||||||    
T  36798433 ttaggggaccaaaatcgcaactttgagaaagttagggggctaaaactgc 36798481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 48157654 - 48157739
Alignment:
Q  14 aggggtttaaattgtaannnnnnnattaggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagccaaa 99  Q
    |||||||||||||||||       |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48157654 aggggtttaaattgtaatttttttattagggggccaaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagccaaa 48157739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 14 - 97
Target Start/End: Complemental strand, 9178717 - 9178634
Alignment:
Q  14 aggggtttaaattgtaannnnnnnattaggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagcca 97  Q
    |||||||||||||||||       || ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9178717 aggggtttaaattgtaatttttttataagggggccaaaatcgcacctttatgaaagttaggaggtcaaaactgcagtttagcca 9178634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 40 - 95
Target Start/End: Original strand, 40169781 - 40169836
Alignment:
Q  40 taggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagc 95  Q
    |||||| ||||||||||||| || ||||||||||||||||||||||||||||||||    
T  40169781 tagggggccaaaatcgcaccattgtgaaagttagggggtcaaaactgcagtttagc 40169836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 313 - 419
Target Start/End: Original strand, 8667722 - 8667828
Alignment:
Q  313 gcgtgaaccggaatgcacgtcaacgtgctcaacaaccgtattcgtctgaacctcaaccgattctacaaacacctcatgtacctcaatgtgctcaacatgg 412  Q
    |||||| || ||||| || ||||| ||||||||||  ||||  || ||||||| | ||||||||||| |||||||||| |||||||||||||||||  ||    
T  8667722 gcgtgacccagaatgaacttcaacttgctcaacaatagtatctgtatgaacctgagccgattctacagacacctcatgcacctcaatgtgctcaactggg 8667821  T
Q  413 gatgaat 419  Q
    |||||||    
T  8667822 gatgaat 8667828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 38 - 96
Target Start/End: Complemental strand, 48157178 - 48157120
Alignment:
Q  38 attaggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagcc 96  Q
    ||||||||  |||||||  ||||||||||||||||||||||||||||||||||||||||    
T  48157178 attagggggtcaaaatcatacctttatgaaagttagggggtcaaaactgcagtttagcc 48157120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 40168695 - 40168639
Alignment:
Q  40 taggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagcc 96  Q
    |||||| ||||||||||||| || | |||||||||||||||||||||||||||||||    
T  40168695 tagggggccaaaatcgcaccattgtaaaagttagggggtcaaaactgcagtttagcc 40168639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 93
Target Start/End: Original strand, 9180670 - 9180725
Alignment:
Q  38 attaggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgcagttta 93  Q
    |||||||| |||||||| ||||||||| ||||||| ||||||||||||||||||||    
T  9180670 attagggggccaaaatcacacctttataaaagttaaggggtcaaaactgcagttta 9180725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 55986319 - 55986368
Alignment:
Q  48 caaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagcca 97  Q
    |||||||||||| || ||||||||||||||| ||||||||||||||||||    
T  55986319 caaaatcgcaccattgtgaaagttagggggttaaaactgcagtttagcca 55986368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 370 - 419
Target Start/End: Original strand, 33041344 - 33041393
Alignment:
Q  370 cgattctacaaacacctcatgtacctcaatgtgctcaacatgggatgaat 419  Q
    |||||||| | |||||||||| |||||||||||||||||| |||||||||    
T  33041344 cgattctatagacacctcatgcacctcaatgtgctcaacaggggatgaat 33041393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 48 - 93
Target Start/End: Complemental strand, 55984813 - 55984768
Alignment:
Q  48 caaaatcgcacctttatgaaagttagggggtcaaaactgcagttta 93  Q
    |||||||||||| || ||||||||||||||| ||||||||||||||    
T  55984813 caaaatcgcaccattgtgaaagttagggggttaaaactgcagttta 55984768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 23759830 - 23759874
Alignment:
Q  39 ttaggggaccaaaatcgcacctttatgaaagttagggggtcaaaa 83  Q
    ||||||||||||||||||| |||||||||||||| ||||| ||||    
T  23759830 ttaggggaccaaaatcgcaactttatgaaagttaaggggttaaaa 23759874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 11824245 - 11824197
Alignment:
Q  39 ttaggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgc 87  Q
    |||||| ||||||||| || ||||| |||||||||||||| ||||||||    
T  11824245 ttagggaaccaaaatcacaactttaggaaagttagggggttaaaactgc 11824197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 29697782 - 29697826
Alignment:
Q  43 gggaccaaaatcgcacctttatgaaagttagggggtcaaaactgc 87  Q
    ||||||||||||||| ||| |||||||||||| ||| ||||||||    
T  29697782 gggaccaaaatcgcaacttcatgaaagttaggaggtgaaaactgc 29697826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 33997896 - 33997956
Alignment:
Q  38 attaggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagccaa 98  Q
    ||||||||  |||||||||| | |||  ||| ||||||||||||||||| |||||||||||    
T  33997896 attagggggtcaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagccaa 33997956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 8e-25; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 38 - 96
Target Start/End: Original strand, 50379972 - 50380030
Alignment:
Q  38 attaggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagcc 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50379972 attaggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagcc 50380030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 46313276 - 46313332
Alignment:
Q  40 taggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagcc 96  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  46313276 tagggggccaaaatcgcacctttgtgaaagttagggggtcaaaactgcagtttagcc 46313332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 368 - 443
Target Start/End: Original strand, 1624793 - 1624868
Alignment:
Q  368 accgattctacaaacacctcatgtacctcaatgtgctcaacatgggatgaatatcatacacactcatgggaaccct 443  Q
    |||||||||||| |||||||||| |||||||||||||||| | ||||||||| |  ||||| ||| ||||||||||    
T  1624793 accgattctacagacacctcatgcacctcaatgtgctcaataggggatgaatgtggtacacgctcgtgggaaccct 1624868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 328 - 409
Target Start/End: Original strand, 2583343 - 2583424
Alignment:
Q  328 cacgtcaacgtgctcaacaaccgtattcgtctgaacctcaaccgattctacaaacacctcatgtacctcaatgtgctcaaca 409  Q
    ||||||| ||||||||||||| |||| |||||||||||  |||||||||||| || | ||||| |||||   ||||||||||    
T  2583343 cacgtcatcgtgctcaacaacagtatccgtctgaacctgcaccgattctacagacccttcatgcacctcttggtgctcaaca 2583424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 96
Target Start/End: Complemental strand, 46312123 - 46312065
Alignment:
Q  38 attaggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagcc 96  Q
    |||||||| ||||||||||| | ||   ||||||||||||||||||||| |||||||||    
T  46312123 attagggggccaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 46312065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 99
Target Start/End: Complemental strand, 2999549 - 2999488
Alignment:
Q  38 attaggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagccaaa 99  Q
    ||||||||| |||||||||| | ||   |||||||| |||||||||||| ||||||||||||    
T  2999549 attaggggatcaaaatcgcaacattgacaaagttagagggtcaaaactgtagtttagccaaa 2999488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 356 - 441
Target Start/End: Original strand, 11776136 - 11776221
Alignment:
Q  356 gtctgaacctcaaccgattctacaaacacctcatgtacctcaatgtgctcaacatgggatgaatatcatacacactcatgggaacc 441  Q
    |||||||||| | ||||||||||||| |||||||| |||||||| ||||||||| ||||||| | | |||||| ||||||||||||    
T  11776136 gtctgaacctgacccgattctacaaaaacctcatgcacctcaatatgctcaacaggggatgagtgtgatacacgctcatgggaacc 11776221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 20409123 - 20409067
Alignment:
Q  40 taggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagcc 96  Q
    |||||| ||||||||||||| || |||||||||||||||||||||||||||||||||    
T  20409123 tagggggccaaaatcgcaccattgtgaaagttagggggtcaaaactgcagtttagcc 20409067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 332 - 432
Target Start/End: Complemental strand, 3056296 - 3056196
Alignment:
Q  332 tcaacgtgctcaacaaccgtattcgtctgaacctcaaccgattctacaaacacctcatgtacctcaatgtgctcaacatgggatgaatatcatacacact 431  Q
    ||||| ||||||||||  ||||  |||||||||| | | ||||||||| |||||||||| |||||||||||||||||  ||||||||| | | |||||||    
T  3056296 tcaacttgctcaacaatagtatctgtctgaacctgagctgattctacagacacctcatgcacctcaatgtgctcaactggggatgaatgtgacacacact 3056197  T
Q  432 c 432  Q
    |    
T  3056196 c 3056196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 16864494 - 16864550
Alignment:
Q  40 taggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagcc 96  Q
    |||||||||||||||||||| || | ||||||||||||| |||||||||||||||||    
T  16864494 taggggaccaaaatcgcaccattgtaaaagttagggggttaaaactgcagtttagcc 16864550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 98
Target Start/End: Original strand, 6978146 - 6978197
Alignment:
Q  47 ccaaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagccaa 98  Q
    ||||||||||||| || ||||||||||||||| |||||||||||||||||||    
T  6978146 ccaaaatcgcaccattgtgaaagttagggggttaaaactgcagtttagccaa 6978197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 6977083 - 6977027
Alignment:
Q  40 taggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagcc 96  Q
    |||||| ||||||| ||||| || ||||||||||||||| |||||||||||||||||    
T  6977083 tagggggccaaaattgcaccattgtgaaagttagggggttaaaactgcagtttagcc 6977027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 20410227 - 20410275
Alignment:
Q  48 caaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagcc 96  Q
    |||||||||||| || | |||||||||||||||||||||||||||||||    
T  20410227 caaaatcgcaccattgtaaaagttagggggtcaaaactgcagtttagcc 20410275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 16859384 - 16859336
Alignment:
Q  48 caaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagcc 96  Q
    |||||||||||| || ||||||||||||||| |||| ||||||||||||    
T  16859384 caaaatcgcaccattgtgaaagttagggggttaaaattgcagtttagcc 16859336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 12766471 - 12766519
Alignment:
Q  39 ttaggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgc 87  Q
    ||||||| ||||||||||| |||  ||||||||||||||| ||||||||    
T  12766471 ttagggggccaaaatcgcaacttcgtgaaagttagggggtgaaaactgc 12766519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 45413479 - 45413535
Alignment:
Q  40 taggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagcc 96  Q
    |||||| ||||||||||||| || |||||||||||||||||||||||||||||||||    
T  45413479 tagggggccaaaatcgcaccattgtgaaagttagggggtcaaaactgcagtttagcc 45413535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 40 - 98
Target Start/End: Complemental strand, 1389289 - 1389231
Alignment:
Q  40 taggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagccaa 98  Q
    |||||| ||||||||||||| || ||||||||||||||| |||||||||||||||||||    
T  1389289 tagggggccaaaatcgcaccattctgaaagttagggggttaaaactgcagtttagccaa 1389231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 45412383 - 45412335
Alignment:
Q  48 caaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagcc 96  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||    
T  45412383 caaaatcgcaccattgtgaaagttagggggtcaaaactgcagtttagcc 45412335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 99
Target Start/End: Original strand, 28851682 - 28851733
Alignment:
Q  48 caaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagccaaa 99  Q
    |||||||||| | || ||||||||||||||||||||||||||||||||||||    
T  28851682 caaaatcgcaacattgtgaaagttagggggtcaaaactgcagtttagccaaa 28851733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 28847389 - 28847336
Alignment:
Q  40 taggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgcagttta 93  Q
    |||||||||||||| ||| | || ||||| ||||||||||||||||||||||||    
T  28847389 taggggaccaaaattgcaacattgtgaaaattagggggtcaaaactgcagttta 28847336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 1394856 - 1394912
Alignment:
Q  40 taggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagcc 96  Q
    |||||| | ||||||||||| || ||||||||||||||| |||||||||| ||||||    
T  1394856 tagggggctaaaatcgcaccattctgaaagttagggggttaaaactgcagattagcc 1394912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 5470592 - 5470640
Alignment:
Q  39 ttaggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgc 87  Q
    ||||||| ||||||||||| ||||| |||||||||||||  ||||||||    
T  5470592 ttagggggccaaaatcgcaactttaggaaagttagggggctaaaactgc 5470640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 324 - 406
Target Start/End: Original strand, 2750 - 2832
Alignment:
Q  324 aatgcacgtcaacgtgctcaacaaccgtattcgtctgaacctcaaccgattctacaaacacctcatgtacctcaatgtgctca 406  Q
    ||||||||||||| |||||||||||  ||| ||||||||||| ||| ||||||||| |||||||||| |||||| | ||||||    
T  2750 aatgcacgtcaacatgctcaacaacaatatccgtctgaacctgaactgattctacagacacctcatgcacctcattatgctca 2832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 38612275 - 38612219
Alignment:
Q  40 taggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagcc 96  Q
    |||||| ||||||||||| | || |||||||||||||||||||||||||||||||||    
T  38612275 tagggggccaaaatcgcaacattgtgaaagttagggggtcaaaactgcagtttagcc 38612219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 38613419 - 38613475
Alignment:
Q  40 taggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagcc 96  Q
    |||||| ||||||||||| | || |||||||||||||||||||||||||||||||||    
T  38613419 tagggggccaaaatcgcaacattgtgaaagttagggggtcaaaactgcagtttagcc 38613475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 23039529 - 23039585
Alignment:
Q  40 taggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagcc 96  Q
    |||||||||||||||||||| || | ||||||| ||||| |||||||||||||||||    
T  23039529 taggggaccaaaatcgcaccattgtcaaagttaaggggttaaaactgcagtttagcc 23039585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 409
Target Start/End: Complemental strand, 23594694 - 23594610
Alignment:
Q  325 atgcacgtcaacgtgctcaacaaccgtattcgtctgaacctcaaccgattctacaaacacctcatgtacctcaatgtgctcaaca 409  Q
    |||||||||| ||||||||||||| |||| |||||||||||  |||||||||||| || | ||||| |||||   ||||||||||    
T  23594694 atgcacgtcatcgtgctcaacaacagtatccgtctgaacctgcaccgattctacagacccttcatgcacctcttggtgctcaaca 23594610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 409
Target Start/End: Complemental strand, 23603616 - 23603532
Alignment:
Q  325 atgcacgtcaacgtgctcaacaaccgtattcgtctgaacctcaaccgattctacaaacacctcatgtacctcaatgtgctcaaca 409  Q
    |||||||||| ||||||||||||| |||| |||||||||||  |||||||||||| || | ||||| |||||   ||||||||||    
T  23603616 atgcacgtcatcgtgctcaacaacagtatccgtctgaacctgcaccgattctacagacccttcatgcacctcttggtgctcaaca 23603532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 377
Target Start/End: Complemental strand, 14412664 - 14412615
Alignment:
Q  328 cacgtcaacgtgctcaacaaccgtattcgtctgaacctcaaccgattcta 377  Q
    ||||||| ||||||||||||| |||| |||||||||||  ||||||||||    
T  14412664 cacgtcatcgtgctcaacaacagtatccgtctgaacctgcaccgattcta 14412615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 16982683 - 16982635
Alignment:
Q  39 ttaggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgc 87  Q
    ||||||||||||||| ||| |||  ||||||||||||||| ||||||||    
T  16982683 ttaggggaccaaaattgcaacttcgtgaaagttagggggtgaaaactgc 16982635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 23039180 - 23039124
Alignment:
Q  40 taggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagcc 96  Q
    |||||| |||||||  |||| || ||||||||||||||| ||||||||| |||||||    
T  23039180 tagggggccaaaattacaccattgtgaaagttagggggttaaaactgcaatttagcc 23039124  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 54539165 - 54539109
Alignment:
Q  40 taggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagcc 96  Q
    |||||| |||||||| |||| || ||||||||||||||| |||||||||||||||||    
T  54539165 tagggggccaaaatcacaccattgtgaaagttagggggttaaaactgcagtttagcc 54539109  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 48053182 - 48053129
Alignment:
Q  40 taggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgcagttta 93  Q
    |||||| ||||||||||||| || |||||||||| |||| ||||||||||||||    
T  48053182 tagggggccaaaatcgcaccattgtgaaagttagagggttaaaactgcagttta 48053129  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 54539500 - 54539556
Alignment:
Q  40 taggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagcc 96  Q
    |||||| ||||||||||||| || | ||||||| ||||| |||||||||||||||||    
T  54539500 tagggggccaaaatcgcaccattgtcaaagttaaggggttaaaactgcagtttagcc 54539556  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 99
Target Start/End: Original strand, 48060806 - 48060841
Alignment:
Q  64 tgaaagttagggggtcaaaactgcagtttagccaaa 99  Q
    ||||||||||||||| ||||||||||||||||||||    
T  48060806 tgaaagttagggggttaaaactgcagtttagccaaa 48060841  T

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Target: scaffold0363 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 377
Target Start/End: Original strand, 6047 - 6096
Alignment:
Q  328 cacgtcaacgtgctcaacaaccgtattcgtctgaacctcaaccgattcta 377  Q
    ||||||| ||||||||||||| |||| |||||||||||  ||||||||||    
T  6047 cacgtcatcgtgctcaacaacagtatccgtctgaacctgcaccgattcta 6096  T

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