View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9836_low_12 (Length: 457)
Name: NF9836_low_12
Description: NF9836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9836_low_12 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Complemental strand, 40545759 - 40545298
Alignment:
| Q |
1 |
aatcaagagcaaggtactgaaaccaaatcacataagtgcgactcatttgaccaaactacatggatcaatcaaggtcacgagtttaaagaatttaataggc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
40545759 |
aatcaagagcaaggtactgaaaccaaatcacataagtgcgactcatttgaccaaactacatggatcaa----ggtcacgagtttaaagaatttaataggc |
40545664 |
T |
|
| Q |
101 |
acaaacaatatataaagacgtaaaagaaagaactttgtattattaatattgaacttctgacacttatccatccaaatgataacatatcaggattcggaaa |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40545663 |
acaatcaatatataaagacgtaaaagaaagaactttgtatta---atattgaacttctgacacttatccatccaaatgataacatatcaggattctgaaa |
40545567 |
T |
|
| Q |
201 |
ctacaatgaagaatatnnnnnnn--------gcaaagcaaagcaaatggcctagtcaactagtaagtgtctttca----cttgataataattttgatatt |
288 |
Q |
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|||||||||||||||| | |||| |||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||| |
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| T |
40545566 |
ctacaatgaagaatatgcatgcataaaaaaaggaaaggaaagcaaatggcctagtcaactagaaagtgtctttcaaatacttgataatagttttgatatt |
40545467 |
T |
|
| Q |
289 |
agcaattgaccaccactttctataaaaggtaaaatgccaataaccacaatcatgagttaaactatctataggagaataataaatttcttttgattggaat |
388 |
Q |
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||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
40545466 |
agcaattgatcaccactttctataaaaggtaaaatgtcaataaccacaatcatgagtaaaactatctataggagaataataaatttcttttgattggaat |
40545367 |
T |
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| Q |
389 |
aaggcttttcttgtaaactttaatctgatcaagacaccattcacctcttcttttaacaccaaactcgac |
457 |
Q |
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| T |
40545366 |
aaggcttttcttgtaaactttaatctgatcaagacaccattcacctcttcttttaataccaagctcgac |
40545298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 31790143 - 31789813
Alignment:
| Q |
1 |
aatcaagagcaaggtactgaaaccaaatcacataagtgcgact-catttgaccaaactacatggatcaatcaaggtcacgagtttaaagaatttaatagg |
99 |
Q |
| |
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|||||||||||||||||||||||||||| |||| ||| |||| ||||| |||||| | |||||||||| |||||||| |||||||||||||| ||| |
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| T |
31790143 |
aatcaagagcaaggtactgaaaccaaattgcataggtgtgacttcatttaaccaaattgcatggatcaa----ggtcacgaatttaaagaatttaacagg |
31790048 |
T |
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| Q |
100 |
cacaaacaatatataaagacgtaaaagaaagaactttgtattattaatattgaacttctgacacttatccatccaaatgataacatatcaggattcggaa |
199 |
Q |
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| T |
31790047 |
cacaaacaatatat-------------------ttttgtat---taatattgaacttatgacatttatccatccaaatgataacatatctggattctgaa |
31789970 |
T |
|
| Q |
200 |
actacaatgaagaatat--nnnnnnngcaaagcaaagcaaatggcctagtcaactagtaagtgtctttc----acttgataataattttgatattagcaa |
293 |
Q |
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||||||||| ||||||| |||| |||||||| ||||||| |||| || | ||||||||| ||||||||||||||||||||||||||| |
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| T |
31789969 |
actacaatggagaatatgcaggcataaaaaaggaaagcaaaaggcctaggcaacaagaatgtgtctttcaaatacttgataataattttgatattagcaa |
31789870 |
T |
|
| Q |
294 |
ttgac-caccactttctataaaaggtaaaatgccaataaccacaatcatgagttaaac |
350 |
Q |
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|||| |||| ||||| |||||||||||| |||||||||||||||||||| |||| |
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| T |
31789869 |
ctgacatgccac-ttctacgaaaggtaaaatgtcaataaccacaatcatgagtaaaac |
31789813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 32033453 - 32033344
Alignment:
| Q |
1 |
aatcaagagcaaggtactgaaaccaaatcacataagtgcgac-tcatttgaccaaactacatggatcaatcaaggtcacgagtttaaagaatttaatagg |
99 |
Q |
| |
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|||||||||||||||||||||||||||| |||| ||| ||| | |||| |||||| | ||||| ||||||||||||| |||||||||||||| ||| |
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| T |
32033453 |
aatcaagagcaaggtactgaaaccaaattgcataggtgtgacttaatttaaccaaattgcatgg----atcaaggtcacgaatttaaagaatttaacagg |
32033358 |
T |
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| Q |
100 |
cacaaacaatatat |
113 |
Q |
| |
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|||||||||||||| |
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| T |
32033357 |
cacaaacaatatat |
32033344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 226 - 350
Target Start/End: Complemental strand, 32033297 - 32033165
Alignment:
| Q |
226 |
aaagcaaagcaaatggcctagtcaactagtaagtgtctttc----acttgat----aataattttgatattagcaattgac-caccactttctataaaag |
316 |
Q |
| |
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|||| |||||||||||||||| ||||||| | ||||||||| ||||||| ||||||||||||||||||||||||| |||| ||||| |||| |
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| T |
32033297 |
aaaggaaagcaaatggcctaggcaactagaatgtgtctttcaaatacttgataataaataattttgatattagcaattgacatgccac-ttctacgaaag |
32033199 |
T |
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| Q |
317 |
gtaaaatgccaataaccacaatcatgagttaaac |
350 |
Q |
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|||||| | |||||||||||||||||||| |||| |
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| T |
32033198 |
gtaaaacgtcaataaccacaatcatgagtaaaac |
32033165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 68 - 216
Target Start/End: Complemental strand, 5162978 - 5162832
Alignment:
| Q |
68 |
atcaaggtcacgagtttaaagaatttaataggcacaaacaatatataaagacgt-aaaagaaagaactttgtattattaatattgaacttctgacactta |
166 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| | | ||| |
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| T |
5162978 |
atcaaggtcacgagtttaaagaatttaataggcacaaacaatatataaagacgtaaaaagaaagaactttg---tattaatattgaactaaaggtattta |
5162882 |
T |
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| Q |
167 |
tccatccaaatgataacatatcaggattcggaaactacaatgaagaatat |
216 |
Q |
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|| ||| |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
5162881 |
tctatctaaatgataacatatcaggattctgaaactacaatgaagaatat |
5162832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 373 - 422
Target Start/End: Complemental strand, 5162717 - 5162668
Alignment:
| Q |
373 |
ttcttttgattggaataaggcttttcttgtaaactttaatctgatcaaga |
422 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
5162717 |
ttcttttgattggaagaaggcttttcttgtaaactttaatctgaccaaga |
5162668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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