View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9836_low_13 (Length: 456)

Name: NF9836_low_13
Description: NF9836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9836_low_13
NF9836_low_13
[»] chr5 (10 HSPs)
chr5 (116-445)||(325987-326329)
chr5 (116-188)||(325435-325507)
chr5 (142-190)||(4790192-4790240)
chr5 (129-164)||(4608590-4608625)
chr5 (121-179)||(4789525-4789583)
chr5 (142-179)||(6804818-6804855)
chr5 (130-179)||(17767576-17767625)
chr5 (122-163)||(26712389-26712430)
chr5 (122-163)||(26982127-26982168)
chr5 (122-179)||(35262458-35262515)
[»] chr7 (12 HSPs)
chr7 (115-208)||(10200095-10200187)
chr7 (130-230)||(29007132-29007233)
chr7 (130-231)||(29006361-29006463)
chr7 (122-179)||(24996668-24996725)
chr7 (116-179)||(24995852-24995915)
chr7 (123-212)||(47799260-47799350)
chr7 (122-163)||(12912118-12912159)
chr7 (122-163)||(12923884-12923925)
chr7 (116-157)||(44540988-44541029)
chr7 (115-179)||(12732246-12732310)
chr7 (116-179)||(20560266-20560329)
chr7 (116-164)||(40320410-40320458)
[»] chr4 (18 HSPs)
chr4 (115-230)||(231983-232098)
chr4 (116-209)||(39429892-39429985)
chr4 (132-231)||(31910570-31910669)
chr4 (116-164)||(41261122-41261170)
chr4 (115-230)||(17512140-17512255)
chr4 (130-231)||(31911401-31911502)
chr4 (143-231)||(32450151-32450239)
chr4 (142-230)||(33409371-33409459)
chr4 (123-163)||(55514355-55514395)
chr4 (125-164)||(47326789-47326828)
chr4 (125-164)||(47341585-47341624)
chr4 (122-164)||(36957576-36957618)
chr4 (130-179)||(6246798-6246847)
chr4 (115-164)||(25970105-25970154)
chr4 (130-179)||(30808635-30808684)
chr4 (116-165)||(34154794-34154843)
chr4 (116-179)||(19860330-19860393)
chr4 (116-164)||(33370875-33370923)
[»] scaffold0268 (1 HSPs)
scaffold0268 (115-208)||(20735-20827)
[»] chr2 (14 HSPs)
chr2 (116-179)||(36390957-36391020)
chr2 (123-212)||(44094769-44094858)
chr2 (116-179)||(34617653-34617716)
chr2 (117-179)||(15602805-15602867)
chr2 (118-183)||(36391653-36391718)
chr2 (116-179)||(2307058-2307121)
chr2 (295-338)||(6182284-6182327)
chr2 (146-233)||(19521371-19521458)
chr2 (116-162)||(14402627-14402673)
chr2 (116-209)||(20991974-20992067)
chr2 (142-179)||(41768728-41768765)
chr2 (130-179)||(42370935-42370984)
chr2 (116-164)||(10670942-10670990)
chr2 (116-207)||(24383019-24383111)
[»] chr3 (11 HSPs)
chr3 (150-230)||(32355898-32355978)
chr3 (122-164)||(19690656-19690698)
chr3 (115-179)||(33968180-33968244)
chr3 (116-171)||(46740558-46740613)
chr3 (115-209)||(43768714-43768808)
chr3 (115-164)||(31598794-31598843)
chr3 (306-338)||(32356068-32356100)
chr3 (116-164)||(33454866-33454914)
chr3 (146-214)||(43638028-43638096)
chr3 (116-164)||(44021286-44021333)
chr3 (116-164)||(49161808-49161856)
[»] scaffold1052 (1 HSPs)
scaffold1052 (146-204)||(360-418)
[»] chr1 (8 HSPs)
chr1 (116-233)||(30780915-30781032)
chr1 (295-338)||(5101017-5101060)
chr1 (118-176)||(30466184-30466242)
chr1 (130-183)||(14924688-14924741)
chr1 (130-179)||(14925327-14925376)
chr1 (123-171)||(29334221-29334269)
chr1 (142-230)||(40028716-40028804)
chr1 (123-171)||(43316364-43316412)
[»] chr8 (10 HSPs)
chr8 (116-179)||(40450971-40451034)
chr8 (116-209)||(42346060-42346153)
chr8 (123-179)||(13935038-13935094)
chr8 (142-190)||(27322561-27322609)
chr8 (146-182)||(33802355-33802391)
chr8 (116-164)||(35840530-35840578)
chr8 (116-164)||(35943076-35943124)
chr8 (142-182)||(39257660-39257700)
chr8 (142-182)||(43971304-43971344)
chr8 (146-214)||(44835379-44835447)
[»] scaffold0129 (1 HSPs)
scaffold0129 (142-204)||(43178-43240)
[»] chr6 (2 HSPs)
chr6 (122-164)||(16764931-16764973)
chr6 (115-212)||(8383970-8384067)
[»] scaffold0189 (1 HSPs)
scaffold0189 (142-179)||(12844-12881)


Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-122; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 116 - 445
Target Start/End: Complemental strand, 326329 - 325987
Alignment:
Q  116 ggtgaggtttagcctgggaaaggaatgttgtttcccaccatgggaaagtaagttttgaccattaaatttaagaggagaattgatcttatcatggtctttg 215  Q
    |||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||  ||||||||||||||||||||      
T  326329 ggtgaggtttagcccgggaaaggaatgttgttttccaccatggaaaagtaagttttgaccattaaatttaagatgaacattgatcttatcatggtcttgt 326230  T
Q  216 cacactacattttttcccac-------------gttatcgacatctttttgtgcggctttttcccagaaatcacgttccaacaaactattagctctacac 302  Q
    ||||||||||||||||||||             ||||||  ||||||||||||||||||||||||| |||||||  ||||||||||||| ||||||||||    
T  326229 cacactacattttttcccactttcttctaccatgttatcctcatctttttgtgcggctttttcccataaatcactatccaacaaactataagctctacac 326130  T
Q  303 tacaacaatctatttttccacttggctgaaagtattatacatcttcatggttcatggcattgctacttaatacccactaatctcttggttaagaaaatca 402  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||    
T  326129 tacaacaatctatttttccacctggctgaaagtattatacatcttcatggttcatgtcattgctacttaagacccaataatctcttggttaagaaaatca 326030  T
Q  403 ggaaagtattaattgtgatttttcaatttcatccccttccttt 445  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  326029 ggaaagtactaattgtgatttttcaatttcatccccttccttt 325987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 116 - 188
Target Start/End: Original strand, 325435 - 325507
Alignment:
Q  116 ggtgaggtttagcctgggaaaggaatgttgtttcccaccatgggaaagtaagttttgaccattaaatttaaga 188  Q
    ||||||||||||| ||||||| |||||||||||  ||||||| |||||||| |||| ||||||| ||||||||    
T  325435 ggtgaggtttagcatgggaaatgaatgttgtttttcaccatgagaaagtaaattttaaccattagatttaaga 325507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 4790240 - 4790192
Alignment:
Q  142 gttgtttcccaccatgggaaagtaagttttgaccattaaatttaagagg 190  Q
    ||||||||||| ||||||||||| | |||||||||||||||| ||||||    
T  4790240 gttgtttcccatcatgggaaagttatttttgaccattaaattaaagagg 4790192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 164
Target Start/End: Complemental strand, 4608625 - 4608590
Alignment:
Q  129 ctgggaaaggaatgttgtttcccaccatgggaaagt 164  Q
    |||||||||||||||| |||||||||||||||||||    
T  4608625 ctgggaaaggaatgttatttcccaccatgggaaagt 4608590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 179
Target Start/End: Original strand, 4789525 - 4789583
Alignment:
Q  121 ggtttagcctgggaaaggaatgttgtttcccaccatgggaaagtaagttttgaccatta 179  Q
    |||||||| |||||||||   ||||||||||||||||||||||| | | ||||||||||    
T  4789525 ggtttagcatgggaaaggggagttgtttcccaccatgggaaagttattcttgaccatta 4789583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 179
Target Start/End: Complemental strand, 6804855 - 6804818
Alignment:
Q  142 gttgtttcccaccatgggaaagtaagttttgaccatta 179  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  6804855 gttgtttcccaccatgggaaagtcaattttgaccatta 6804818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 17767625 - 17767576
Alignment:
Q  130 tgggaaaggaatgttgtttcccaccatgggaaagtaagttttgaccatta 179  Q
    ||||||||||  ||||||||||||||||||||||||  ||| ||||||||    
T  17767625 tgggaaaggatcgttgtttcccaccatgggaaagtagatttagaccatta 17767576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 163
Target Start/End: Complemental strand, 26712430 - 26712389
Alignment:
Q  122 gtttagcctgggaaaggaatgttgtttcccaccatgggaaag 163  Q
    ||||||| ||||||||| | ||||||||||||||||||||||    
T  26712430 gtttagcatgggaaagggaagttgtttcccaccatgggaaag 26712389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 163
Target Start/End: Complemental strand, 26982168 - 26982127
Alignment:
Q  122 gtttagcctgggaaaggaatgttgtttcccaccatgggaaag 163  Q
    ||||||| ||||||||| | ||||||||||||||||||||||    
T  26982168 gtttagcatgggaaagggaagttgtttcccaccatgggaaag 26982127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 35262458 - 35262515
Alignment:
Q  122 gtttagcctgggaaaggaatgttgtttcccaccatgggaaagtaagttttgaccatta 179  Q
    ||||||| ||||||||||   |||||||| ||||||||||||| | ||||||||||||    
T  35262458 gtttagcatgggaaaggataattgtttcctaccatgggaaagttatttttgaccatta 35262515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 115 - 208
Target Start/End: Original strand, 10200095 - 10200187
Alignment:
Q  115 tggtgaggtttagcctgggaaaggaatgttgtttcccaccatgggaaagtaagttttgaccattaaatttaagaggagaattgatcttatcatg 208  Q
    |||||||||||||||| | |||| |||||||| | ||||||| ||||||||||||  |||||||| |||||||||||| |||||||||||||||    
T  10200095 tggtgaggtttagcctcgaaaag-aatgttgtcttccaccataggaaagtaagttgcgaccattagatttaagaggagcattgatcttatcatg 10200187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 130 - 230
Target Start/End: Complemental strand, 29007233 - 29007132
Alignment:
Q  130 tgggaaaggaatgttgtttcccaccatgggaaagtaag-ttttgaccattaaatttaagaggagaattgatcttatcatggtctttgcacactacatttt 228  Q
    |||||||||  |||| ||||||||||||||||||| || |||| ||||||| ||| |||||||| | | || |||||||||||| | ||||||| |||||    
T  29007233 tgggaaaggcttgttttttcccaccatgggaaagttagtttttaaccattagattaaagaggagtactaattttatcatggtctatccacactatatttt 29007134  T
Q  229 tt 230  Q
    ||    
T  29007133 tt 29007132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 130 - 231
Target Start/End: Original strand, 29006361 - 29006463
Alignment:
Q  130 tgggaaaggaatgttgtttcccaccatgggaaagtaag-ttttgaccattaaatttaagaggagaattgatcttatcatggtctttgcacactacatttt 228  Q
    |||||||||  |||| ||||||||||||||||||| || |||| ||||||| ||| |||||||| |   || |||||||||||| | ||||||| |||||    
T  29006361 tgggaaaggcttgttttttcccaccatgggaaagttagtttttaaccattagattaaagaggagtaccaattttatcatggtctatccacactatatttt 29006460  T
Q  229 ttc 231  Q
    |||    
T  29006461 ttc 29006463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 24996725 - 24996668
Alignment:
Q  122 gtttagcctgggaaaggaatgttgtttcccaccatgggaaagtaagttttgaccatta 179  Q
    ||||||| |||||||||   ||||||||||||||||||||||||  ||||||||||||    
T  24996725 gtttagcatgggaaaggggagttgtttcccaccatgggaaagtattttttgaccatta 24996668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 24995852 - 24995915
Alignment:
Q  116 ggtgaggtttagcctgggaaaggaatgttgtttcccaccatgggaaagtaagttttgaccatta 179  Q
    |||| |||||||  |||||||||   ||||||||||||||||||||||||  ||||||||||||    
T  24995852 ggtggggtttagaatgggaaaggggagttgtttcccaccatgggaaagtattttttgaccatta 24995915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 212
Target Start/End: Original strand, 47799260 - 47799350
Alignment:
Q  123 tttagcctgggaaaggaatgttgtttcccaccatgggaaagtaag-ttttgaccattaaatttaagaggagaattgatcttatcatggtct 212  Q
    ||||||||||| |||  | ||| ||||||| |||||||||||  | |||| ||||||| ||| |||||| | |||||||||||||||||||    
T  47799260 tttagcctgggtaagtgaagttttttcccatcatgggaaagtttgatttttaccattagattaaagaggtgtattgatcttatcatggtct 47799350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 163
Target Start/End: Original strand, 12912118 - 12912159
Alignment:
Q  122 gtttagcctgggaaaggaatgttgtttcccaccatgggaaag 163  Q
    |||||||||||||| ||||| || ||||||||||||||||||    
T  12912118 gtttagcctgggaatggaattttctttcccaccatgggaaag 12912159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 163
Target Start/End: Complemental strand, 12923925 - 12923884
Alignment:
Q  122 gtttagcctgggaaaggaatgttgtttcccaccatgggaaag 163  Q
    |||||||||||||| ||||| || ||||||||||||||||||    
T  12923925 gtttagcctgggaatggaattttctttcccaccatgggaaag 12923884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 157
Target Start/End: Original strand, 44540988 - 44541029
Alignment:
Q  116 ggtgaggtttagcctgggaaaggaatgttgtttcccaccatg 157  Q
    ||||||||||||| ||||||||||  ||||||||||||||||    
T  44540988 ggtgaggtttagcatgggaaaggagagttgtttcccaccatg 44541029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 179
Target Start/End: Original strand, 12732246 - 12732310
Alignment:
Q  115 tggtgaggtttagcctgggaaaggaatgttgtttcccaccatgggaaagtaagttttgaccatta 179  Q
    ||||| |||||||| ||||||||| |    |||||||||||||||||||||| | ||||||||||    
T  12732246 tggtggggtttagcatgggaaagggaaagagtttcccaccatgggaaagtaaatattgaccatta 12732310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 20560329 - 20560266
Alignment:
Q  116 ggtgaggtttagcctgggaaaggaatgttgtttcccaccatgggaaagtaag-ttttgaccatta 179  Q
    ||||||||||||| ||||||||  || || ||||||||||||||||||| || ||||||||||||    
T  20560329 ggtgaggtttagcatgggaaagctatatt-tttcccaccatgggaaagttagtttttgaccatta 20560266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 40320458 - 40320410
Alignment:
Q  116 ggtgaggtttagcctgggaaaggaatgttgtttcccaccatgggaaagt 164  Q
    |||| |||||||| ||||||||||  ||||||||||||||||| |||||    
T  40320458 ggtggggtttagcatgggaaaggagagttgtttcccaccatggaaaagt 40320410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 115 - 230
Target Start/End: Complemental strand, 232098 - 231983
Alignment:
Q  115 tggtgaggtttagcctgggaaaggaatgttgtttcccaccatgggaaagtaagttttgaccattaaatttaagaggagaattgatcttatcatggtcttt 214  Q
    ||||| |||||||  ||||||||| | ||||||||||||||||||||||||| |||| ||||||| ||  | |||||  |||||||||||||| |||| |    
T  232098 tggtggggtttagtatgggaaagggaagttgtttcccaccatgggaaagtaaattttaaccattagataaatgaggaacattgatcttatcatagtctct 231999  T
Q  215 gcacactacatttttt 230  Q
     ||||||| |||||||    
T  231998 ccacactaaatttttt 231983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 116 - 209
Target Start/End: Complemental strand, 39429985 - 39429892
Alignment:
Q  116 ggtgaggtttagcctgggaaaggaatgttgtttcccaccatgggaaagtaagttttgaccattaaatttaagaggagaattgatcttatcatgg 209  Q
    |||| |||||||| |||||| |||  |||||||||||||||||||||||   |||  ||||||||||| |||||||| ||| || |||||||||    
T  39429985 ggtggggtttagcatgggaatggagagttgtttcccaccatgggaaagtttttttcaaccattaaattaaagaggagtattaattttatcatgg 39429892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 132 - 231
Target Start/End: Original strand, 31910570 - 31910669
Alignment:
Q  132 ggaaaggaatgttgtttcccaccatgggaaagtaag-ttttgaccattaaatttaagaggagaattgatcttatcatggtctttgcacactacatttttt 230  Q
    |||||||  |||| ||||||||||||||||||| || |||| ||||||||||| |||||||| ||  || |||||||||||| | ||||||| |||||||    
T  31910570 ggaaaggcttgttttttcccaccatgggaaagttagtttttaaccattaaattaaagaggagtatcaattttatcatggtctat-cacactatatttttt 31910668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 41261122 - 41261170
Alignment:
Q  116 ggtgaggtttagcctgggaaaggaatgttgtttcccaccatgggaaagt 164  Q
    ||||||||||||| ||||||||||| ||||||| |||||||||||||||    
T  41261122 ggtgaggtttagcatgggaaaggaaagttgttttccaccatgggaaagt 41261170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 115 - 230
Target Start/End: Complemental strand, 17512255 - 17512140
Alignment:
Q  115 tggtgaggtttagcctgggaaaggaatgttgtttcccaccatgggaaagtaagttttgaccattaaatttaagaggagaattgatcttatcatggtcttt 214  Q
    ||||| |||||||| || ||| |||  ||||||||||| ||||||||||||| ||||   ||||| ||| |||||| | |||||| |||||||||||| |    
T  17512255 tggtggggtttagcatgagaatggatagttgtttcccatcatgggaaagtaaattttagtcattagattaaagaggtgtattgattttatcatggtctat 17512156  T
Q  215 gcacactacatttttt 230  Q
    |  ||||| |||||||    
T  17512155 gtgcactatatttttt 17512140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 130 - 231
Target Start/End: Complemental strand, 31911502 - 31911401
Alignment:
Q  130 tgggaaaggaatgttgtttcccaccatgggaaagtaagttttgaccattaaatttaagaggagaattgatcttatcatggtctttgcacactacattttt 229  Q
    ||||||||||   |||||||||||||||| ||||||  |||||||||| | ||| | |||||| |  ||| |||||||||||| | ||||||| ||||||    
T  31911502 tgggaaaggatatttgtttcccaccatggaaaagtattttttgaccatcagattaaggaggagtaccgattttatcatggtctatccacactatattttt 31911403  T
Q  230 tc 231  Q
    ||    
T  31911402 tc 31911401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 143 - 231
Target Start/End: Complemental strand, 32450239 - 32450151
Alignment:
Q  143 ttgtttcccaccatgggaaagtaagttttgaccattaaatttaagaggagaattgatcttatcatggtctttgcacactacattttttc 231  Q
    |||||||||||||||| ||||||  |||||||||| | ||| | |||||| |  ||| |||||||||||| | ||||||| ||||||||    
T  32450239 ttgtttcccaccatggaaaagtattttttgaccatcagattaaggaggagtaccgattttatcatggtctatccacactatattttttc 32450151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 230
Target Start/End: Complemental strand, 33409459 - 33409371
Alignment:
Q  142 gttgtttcccaccatgggaaagtaagttttgaccattaaatttaagaggagaattgatcttatcatggtctttgcacactacatttttt 230  Q
    ||||||||||||||| ||||||||| ||||  |||||| ||| |||||| | || ||| ||| |||||||| || |||||| |||||||    
T  33409459 gttgtttcccaccataggaaagtaaattttatccattagattaaagaggtgtatagattttaacatggtctatgtacactatatttttt 33409371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 123 - 163
Target Start/End: Complemental strand, 55514395 - 55514355
Alignment:
Q  123 tttagcctgggaaaggaatgttgtttcccaccatgggaaag 163  Q
    |||||| ||||||||||| ||||||||||||||||||||||    
T  55514395 tttagcatgggaaaggaaagttgtttcccaccatgggaaag 55514355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 164
Target Start/End: Complemental strand, 47326828 - 47326789
Alignment:
Q  125 tagcctgggaaaggaatgttgtttcccaccatgggaaagt 164  Q
    |||| ||||||||||| |||||||||||||||||||||||    
T  47326828 tagcatgggaaaggaaagttgtttcccaccatgggaaagt 47326789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 164
Target Start/End: Complemental strand, 47341624 - 47341585
Alignment:
Q  125 tagcctgggaaaggaatgttgtttcccaccatgggaaagt 164  Q
    |||| ||||||||||| |||||||||||||||||||||||    
T  47341624 tagcatgggaaaggaaagttgtttcccaccatgggaaagt 47341585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 164
Target Start/End: Complemental strand, 36957618 - 36957576
Alignment:
Q  122 gtttagcctgggaaaggaatgttgtttcccaccatgggaaagt 164  Q
    ||||||||||||| ||| ||||| |||||||||||||||||||    
T  36957618 gtttagcctgggatagggatgttttttcccaccatgggaaagt 36957576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 6246798 - 6246847
Alignment:
Q  130 tgggaaaggaatgttgtttcccaccatgggaaagtaagttttgaccatta 179  Q
    ||||||||| |  |||||||||||||||||||||| | ||||||||||||    
T  6246798 tgggaaagggaaattgtttcccaccatgggaaagttaattttgaccatta 6246847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 25970105 - 25970154
Alignment:
Q  115 tggtgaggtttagcctgggaaaggaatgttgtttcccaccatgggaaagt 164  Q
    ||||| |||||||| |||||||||   |||||||||||||||||||||||    
T  25970105 tggtggggtttagcatgggaaaggggagttgtttcccaccatgggaaagt 25970154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 30808635 - 30808684
Alignment:
Q  130 tgggaaaggaatgttgtttcccaccatgggaaagtaagttttgaccatta 179  Q
    ||||||||||  ||||||||||||||||||||||| |  |||||||||||    
T  30808635 tgggaaaggagagttgtttcccaccatgggaaagttaaatttgaccatta 30808684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 34154794 - 34154843
Alignment:
Q  116 ggtgaggtttagcctgggaaaggaatgttgtttcccaccatgggaaagta 165  Q
    |||| |||||||| ||||||| |||  |||||||||||||||||||||||    
T  34154794 ggtggggtttagcatgggaaaagaaacttgtttcccaccatgggaaagta 34154843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 19860330 - 19860393
Alignment:
Q  116 ggtgaggtttagcctgggaaaggaatgttgtttcccaccatgggaaagtaag-ttttgaccatta 179  Q
    ||||||||||||| ||||||||  || || ||||||||||||||||||| || ||||||||||||    
T  19860330 ggtgaggtttagcatgggaaagctatttt-tttcccaccatgggaaagttagtttttgaccatta 19860393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 33370923 - 33370875
Alignment:
Q  116 ggtgaggtttagcctgggaaaggaatgttgtttcccaccatgggaaagt 164  Q
    |||| |||||||| ||||||||||   ||||||||||||||||||||||    
T  33370923 ggtggggtttagcatgggaaaggatacttgtttcccaccatgggaaagt 33370875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0268 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 115 - 208
Target Start/End: Complemental strand, 20827 - 20735
Alignment:
Q  115 tggtgaggtttagcctgggaaaggaatgttgtttcccaccatgggaaagtaagttttgaccattaaatttaagaggagaattgatcttatcatg 208  Q
    |||||||||| ||||| | |||| |||||||||||||||||||| ||||||||||  |||||||| |||| |||| || |||||||||||||||    
T  20827 tggtgaggttaagcctcgaaaag-aatgttgtttcccaccatggaaaagtaagttgcgaccattagatttcagagaagcattgatcttatcatg 20735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 36390957 - 36391020
Alignment:
Q  116 ggtgaggtttagcctgggaaaggaatgttgtttcccaccatgggaaagtaagttttgaccatta 179  Q
    |||| |||||||| ||||||||| | ||||||||||||||||||||||||| |||| |||||||    
T  36390957 ggtggggtttagcatgggaaagggaagttgtttcccaccatgggaaagtaaattttaaccatta 36391020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 123 - 212
Target Start/End: Complemental strand, 44094858 - 44094769
Alignment:
Q  123 tttagcctgggaaaggaatgttgtttcccaccatgggaaagtaagttttgaccattaaatttaagaggagaattgatcttatcatggtct 212  Q
    |||||| ||||||||||| |||||||||||||||   |||||   |||||||||||||||| |||||||| | |||| ||||||| ||||    
T  44094858 tttagcatgggaaaggaaagttgtttcccaccataaaaaagttttttttgaccattaaattaaagaggagcactgattttatcattgtct 44094769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 34617653 - 34617716
Alignment:
Q  116 ggtgaggtttagcctgggaaaggaatgttgtttcccaccatgggaaagtaagttttgaccatta 179  Q
    |||| |||||||| ||||||||||   |||||||||||||||||||||| | ||||||||||||    
T  34617653 ggtggggtttagcatgggaaaggataattgtttcccaccatgggaaagttatttttgaccatta 34617716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 179
Target Start/End: Complemental strand, 15602867 - 15602805
Alignment:
Q  117 gtgaggtttagcctgggaaaggaatgttgtttcccaccatgggaaagtaagttttgaccatta 179  Q
    |||||||||||| | ||||||| | ||||||||||||||||||||| ||  ||||||||||||    
T  15602867 gtgaggtttagcataggaaagggaagttgtttcccaccatgggaaaatattttttgaccatta 15602805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 118 - 183
Target Start/End: Complemental strand, 36391718 - 36391653
Alignment:
Q  118 tgaggtttagcctgggaaaggaatgttgtttcccaccatgggaaagtaagttttgaccattaaatt 183  Q
    ||||||||||  |||||||||   ||||||| ||||||||||||||||| |||| |||||||||||    
T  36391718 tgaggtttagtatgggaaaggggagttgttttccaccatgggaaagtaaattttaaccattaaatt 36391653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 2307121 - 2307058
Alignment:
Q  116 ggtgaggtttagcctgggaaaggaatgttgtttcccaccatgggaaagtaagttttgaccatta 179  Q
    ||||||||||||| ||||||||| | ||||||| |||||||| |||||||  || |||||||||    
T  2307121 ggtgaggtttagcatgggaaagggaagttgttttccaccatgagaaagtattttgtgaccatta 2307058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 338
Target Start/End: Original strand, 6182284 - 6182327
Alignment:
Q  295 ctctacactacaacaatctatttttccacttggctgaaagtatt 338  Q
    ||||||||  |||||||||||||||||| |||||||||||||||    
T  6182284 ctctacacatcaacaatctatttttccatttggctgaaagtatt 6182327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 233
Target Start/End: Original strand, 19521371 - 19521458
Alignment:
Q  146 tttcccaccatgggaaagtaagttttgaccattaaatttaagaggagaattgatcttatcatggtctttgcacactacattttttccc 233  Q
    ||||||| ||||||||||||| | || ||||||| ||| |||||||  |||||| ||||||| ||||||  ||| || ||||||||||    
T  19521371 tttcccatcatgggaaagtaaatcttaaccattagattcaagaggaacattgattttatcatagtctttctacattatattttttccc 19521458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 14402627 - 14402673
Alignment:
Q  116 ggtgaggtttagcctgggaaaggaatgttgtttcccaccatgggaaa 162  Q
    |||||| ||||||||||||||  ||| ||||||||||||||||||||    
T  14402627 ggtgagatttagcctgggaaacaaattttgtttcccaccatgggaaa 14402673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 209
Target Start/End: Complemental strand, 20992067 - 20991974
Alignment:
Q  116 ggtgaggtttagcctgggaaaggaatgttgtttcccaccatgggaaagtaagttttgaccattaaatttaagaggagaattgatcttatcatgg 209  Q
    |||| |||||||| |||||| |||  ||||||| |||||||||||||||   |||  ||||||| ||| |||||||| ||| || |||||||||    
T  20992067 ggtggggtttagcatgggaatggagagttgttttccaccatgggaaagtttttttcaaccattagattaaagaggagtattaattttatcatgg 20991974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 179
Target Start/End: Complemental strand, 41768765 - 41768728
Alignment:
Q  142 gttgtttcccaccatgggaaagtaagttttgaccatta 179  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  41768765 gttgtttcccaccatgggaaagtcaattttgaccatta 41768728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 42370984 - 42370935
Alignment:
Q  130 tgggaaaggaatgttgtttcccaccatgggaaagtaagttttgaccatta 179  Q
    |||||| |||| ||||||||||||||||||||||||| | ||| ||||||    
T  42370984 tgggaatggaaagttgtttcccaccatgggaaagtaaatattggccatta 42370935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 10670990 - 10670942
Alignment:
Q  116 ggtgaggtttagcctgggaaaggaatgttgtttcccaccatgggaaagt 164  Q
    ||||||||||||| ||||||||||| |||||||  |||||||| |||||    
T  10670990 ggtgaggtttagcatgggaaaggaaagttgtttttcaccatggaaaagt 10670942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 207
Target Start/End: Complemental strand, 24383111 - 24383019
Alignment:
Q  116 ggtgaggtttagcctgggaaaggaatgttgtttccc-accatgggaaagtaagttttgaccattaaatttaagaggagaattgatcttatcat 207  Q
    |||| |||||||  ||||||||| | |||||||||| |||||||||||||   |||  ||||||||||| |||||||| | |||| |||||||    
T  24383111 ggtggggtttagtatgggaaagggaagttgtttccccaccatgggaaagtttttttgtaccattaaattaaagaggagtactgattttatcat 24383019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 150 - 230
Target Start/End: Original strand, 32355898 - 32355978
Alignment:
Q  150 ccaccatgggaaagtaagttttgaccattaaatttaagaggagaattgatcttatcatggtctttgcacactacatttttt 230  Q
    ||||||| |||||||| ||||||||||||| |||||||| ||  ||||||||||| || |||| | ||||||| |||||||    
T  32355898 ccaccataggaaagtaggttttgaccattagatttaagatgaacattgatcttatgatagtctcttcacactagatttttt 32355978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 164
Target Start/End: Original strand, 19690656 - 19690698
Alignment:
Q  122 gtttagcctgggaaaggaatgttgtttcccaccatgggaaagt 164  Q
    ||||||||||||| ||||||||| |||||||||||||||||||    
T  19690656 gtttagcctgggataggaatgttttttcccaccatgggaaagt 19690698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 115 - 179
Target Start/End: Original strand, 33968180 - 33968244
Alignment:
Q  115 tggtgaggtttagcctgggaaaggaatgttgtttcccaccatgggaaagtaagttttgaccatta 179  Q
    ||||| |||||||| ||||||||| |  |||||||||||||||||||| ||  ||||||||||||    
T  33968180 tggtggggtttagcatgggaaagggaacttgtttcccaccatgggaaaatattttttgaccatta 33968244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 171
Target Start/End: Complemental strand, 46740613 - 46740558
Alignment:
Q  116 ggtgaggtttagcctgggaaaggaatgttgtttcccaccatgggaaagtaagtttt 171  Q
    ||||||||||||||||| ||||    ||| ||||||||||||||||||||||||||    
T  46740613 ggtgaggtttagcctggaaaagactagttttttcccaccatgggaaagtaagtttt 46740558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 209
Target Start/End: Complemental strand, 43768808 - 43768714
Alignment:
Q  115 tggtgaggtttagcctgggaaaggaatgttgtttcccaccatgggaaagtaagttttgaccattaaatttaagaggagaattgatcttatcatgg 209  Q
    ||||| |||||||| |||||| |||  ||||||| |||||||||||||||   |||  ||||||| ||| |||||||| ||| || |||||||||    
T  43768808 tggtggggtttagcatgggaatggagagttgttttccaccatgggaaagtttttttcaaccattagattaaagaggagtattaattttatcatgg 43768714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 164
Target Start/End: Complemental strand, 31598843 - 31598794
Alignment:
Q  115 tggtgaggtttagcctgggaaaggaatgttgtttcccaccatgggaaagt 164  Q
    |||||| ||||||| ||| |||| || |||||||||||||||||||||||    
T  31598843 tggtgaagtttagcatggaaaagaaaagttgtttcccaccatgggaaagt 31598794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 338
Target Start/End: Original strand, 32356068 - 32356100
Alignment:
Q  306 aacaatctatttttccacttggctgaaagtatt 338  Q
    ||||||||||||||||| |||||||||||||||    
T  32356068 aacaatctatttttccatttggctgaaagtatt 32356100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 33454866 - 33454914
Alignment:
Q  116 ggtgaggtttagcctgggaaaggaatgttgtttcccaccatgggaaagt 164  Q
    |||| |||||||| |||||||||||  ||||||||||||||| ||||||    
T  33454866 ggtggggtttagcatgggaaaggaaaattgtttcccaccatgagaaagt 33454914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 43638096 - 43638028
Alignment:
Q  146 tttcccaccatgggaaagtaagttttgaccattaaatttaagaggagaattgatcttatcatggtcttt 214  Q
    ||||||| ||||||||||||| | |  ||||||| |||||||||||  |||||| ||||||| ||||||    
T  43638096 tttcccatcatgggaaagtaaatctcaaccattagatttaagaggaacattgattttatcatagtcttt 43638028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 44021286 - 44021333
Alignment:
Q  116 ggtgaggtttagcctgggaaaggaatgttgtttcccaccatgggaaagt 164  Q
    |||| |||||||| |||||||| || |||||||||||||||||||||||    
T  44021286 ggtggggtttagcatgggaaagaaa-gttgtttcccaccatgggaaagt 44021333  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 49161856 - 49161808
Alignment:
Q  116 ggtgaggtttagcctgggaaaggaatgttgtttcccaccatgggaaagt 164  Q
    ||||||||||||| |||||||||    ||||||||||||||||||||||    
T  49161856 ggtgaggtttagcatgggaaaggggaattgtttcccaccatgggaaagt 49161808  T

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Target: scaffold1052 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1052
Description:

Target: scaffold1052; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 204
Target Start/End: Original strand, 360 - 418
Alignment:
Q  146 tttcccaccatgggaaagtaagttttgaccattaaatttaagaggagaattgatcttat 204  Q
    ||||||||||| |||||||| ||||||||||||| |||||||| ||  |||||||||||    
T  360 tttcccaccataggaaagtaggttttgaccattagatttaagatgaacattgatcttat 418  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 116 - 233
Target Start/End: Complemental strand, 30781032 - 30780915
Alignment:
Q  116 ggtgaggtttagcctgggaaaggaatgttgtttcccaccatgggaaagtaagttttgaccattaaatttaagaggagaattgatcttatcatggtctttg 215  Q
    ||||||||||| | ||||||||||  ||||||||||| ||||||||||||| | || ||| ||| ||| || ||||  |||||| ||||||| |||| |     
T  30781032 ggtgaggtttaacatgggaaaggagagttgtttcccatcatgggaaagtaaatgtttaccgttagattaaaaaggaacattgattttatcatagtctctc 30780933  T
Q  216 cacactacattttttccc 233  Q
     |||||  ||||||||||    
T  30780932 tacactgaattttttccc 30780915  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 338
Target Start/End: Original strand, 5101017 - 5101060
Alignment:
Q  295 ctctacactacaacaatctatttttccacttggctgaaagtatt 338  Q
    ||||||||  |||||||||||||||||| |||||||||||||||    
T  5101017 ctctacacatcaacaatctatttttccatttggctgaaagtatt 5101060  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 176
Target Start/End: Original strand, 30466184 - 30466242
Alignment:
Q  118 tgaggtttagcctgggaaaggaatgttgtttcccaccatgggaaagtaagttttgacca 176  Q
    ||||||||||| |||||| ||   ||||||||||||||||||||||||  |||||||||    
T  30466184 tgaggtttagcatgggaatggggagttgtttcccaccatgggaaagtagattttgacca 30466242  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 183
Target Start/End: Original strand, 14924688 - 14924741
Alignment:
Q  130 tgggaaaggaatgttgtttcccaccatgggaaagtaagttttgaccattaaatt 183  Q
    ||||||||| | ||||||||||||||||||||||  | |||||||| |||||||    
T  14924688 tgggaaagggaagttgtttcccaccatgggaaagctaattttgaccgttaaatt 14924741  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 14925376 - 14925327
Alignment:
Q  130 tgggaaaggaatgttgtttcccaccatgggaaagtaagttttgaccatta 179  Q
    |||| |||||| ||||||||||||||||||||||  | ||||||||||||    
T  14925376 tggggaaggaaagttgtttcccaccatgggaaagctaattttgaccatta 14925327  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 171
Target Start/End: Original strand, 29334221 - 29334269
Alignment:
Q  123 tttagcctgggaaaggaatgttgtttcccaccatgggaaagtaagtttt 171  Q
    |||||| |||||| |||  ||||||||||||||||||||||||| ||||    
T  29334221 tttagcatgggaatggatagttgtttcccaccatgggaaagtaaatttt 29334269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 230
Target Start/End: Complemental strand, 40028804 - 40028716
Alignment:
Q  142 gttgtttcccaccatgggaaagtaagttttgaccattaaatttaagaggagaattgatcttatcatggtctttgcacactacatttttt 230  Q
    ||||||||||||||| ||||||||| ||||  |||||| ||| |||||| | || ||| ||| |||||||| || ||| || |||||||    
T  40028804 gttgtttcccaccataggaaagtaaattttatccattagattaaagaggtgtatagattttaacatggtctatgtacattatatttttt 40028716  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 171
Target Start/End: Original strand, 43316364 - 43316412
Alignment:
Q  123 tttagcctgggaaaggaatgttgtttcccaccatgggaaagtaagtttt 171  Q
    |||||| |||||| |||  ||||||||||||||||||||||||| ||||    
T  43316364 tttagcatgggaatggatagttgtttcccaccatgggaaagtaaatttt 43316412  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 40451034 - 40450971
Alignment:
Q  116 ggtgaggtttagcctgggaaaggaatgttgtttcccaccatgggaaagtaagttttgaccatta 179  Q
    |||| |||||||  ||||||| | | ||||||||||||||||||||||||| |||| |||||||    
T  40451034 ggtggggtttagtatgggaaatgtaagttgtttcccaccatgggaaagtaaattttaaccatta 40450971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 209
Target Start/End: Complemental strand, 42346153 - 42346060
Alignment:
Q  116 ggtgaggtttagcctgggaaaggaatgttgtttcccaccatgggaaagtaagttttgaccattaaatttaagaggagaattgatcttatcatgg 209  Q
    |||| |||||||| |||||| |||  ||||||||||| |||||||||||   |||  ||||||| ||| |||||||| ||| || |||||||||    
T  42346153 ggtggggtttagcatgggaatggagagttgtttcccatcatgggaaagtttttttcaaccattagattaaagaggagtattaattttatcatgg 42346060  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 13935094 - 13935038
Alignment:
Q  123 tttagcctgggaaaggaatgttgtttcccaccatgggaaagtaagttttgaccatta 179  Q
    |||||| ||||||||||| ||||||| ||||||| ||||||| | |||| |||||||    
T  13935094 tttagcatgggaaaggaaagttgttttccaccataggaaagtcacttttaaccatta 13935038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 27322609 - 27322561
Alignment:
Q  142 gttgtttcccaccatgggaaagtaagttttgaccattaaatttaagagg 190  Q
    |||||||||||| |||||||||| | | |||||||||||||| ||||||    
T  27322609 gttgtttcccacgatgggaaagttattcttgaccattaaattaaagagg 27322561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 33802391 - 33802355
Alignment:
Q  146 tttcccaccatgggaaagtaagttttgaccattaaat 182  Q
    ||||||||||||||||||||| | |||||||||||||    
T  33802391 tttcccaccatgggaaagtaaatattgaccattaaat 33802355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 35840578 - 35840530
Alignment:
Q  116 ggtgaggtttagcctgggaaaggaatgttgtttcccaccatgggaaagt 164  Q
    |||| |||||||| ||||||||| | |||||||||||| ||||||||||    
T  35840578 ggtggggtttagcatgggaaagggaagttgtttcccacgatgggaaagt 35840530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 35943076 - 35943124
Alignment:
Q  116 ggtgaggtttagcctgggaaaggaatgttgtttcccaccatgggaaagt 164  Q
    |||| |||||||| ||||||||| | |||||||||||||||||| ||||    
T  35943076 ggtggggtttagcatgggaaagggaagttgtttcccaccatggggaagt 35943124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 39257660 - 39257700
Alignment:
Q  142 gttgtttcccaccatgggaaagtaagttttgaccattaaat 182  Q
    ||||||||||||||||||||||  | |||||||||||||||    
T  39257660 gttgtttcccaccatgggaaagctaattttgaccattaaat 39257700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 43971304 - 43971344
Alignment:
Q  142 gttgtttcccaccatgggaaagtaagttttgaccattaaat 182  Q
    ||||||||||||||||||||||  | |||||||||||||||    
T  43971304 gttgtttcccaccatgggaaagctaattttgaccattaaat 43971344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 44835447 - 44835379
Alignment:
Q  146 tttcccaccatgggaaagtaagttttgaccattaaatttaagaggagaattgatcttatcatggtcttt 214  Q
    ||||||| ||||||||||||| | |  ||||||||||||||||| |  |||||| ||||||| ||||||    
T  44835447 tttcccatcatgggaaagtaaatctcaaccattaaatttaagagaaacattgattttatcatagtcttt 44835379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 204
Target Start/End: Complemental strand, 43240 - 43178
Alignment:
Q  142 gttgtttcccaccatgggaaagtaagttttgaccattaaatttaagaggagaattgatcttat 204  Q
    ||||||||||| ||||||||||||| | || ||||||||||| |||||||  |||||| ||||    
T  43240 gttgtttcccatcatgggaaagtaaatcttaaccattaaattaaagaggaacattgattttat 43178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 164
Target Start/End: Original strand, 16764931 - 16764973
Alignment:
Q  122 gtttagcctgggaaaggaatgttgtttcccaccatgggaaagt 164  Q
    ||||||| ||||||||||| |||||||||||||||||| ||||    
T  16764931 gtttagcatgggaaaggaaagttgtttcccaccatggggaagt 16764973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 212
Target Start/End: Complemental strand, 8384067 - 8383970
Alignment:
Q  115 tggtgaggtttagcctgggaaaggaatgttgtttcccaccatgggaaagtaagttttgaccattaaatttaagaggagaattgatcttatcatggtct 212  Q
    ||||| |||||||| ||||||||    ||||||||||||||||| ||| ||  |||||||  ||| |||||||||||   |||||||||| |||||||    
T  8384067 tggtggggtttagcatgggaaagtggagttgtttcccaccatggaaaaatattttttgacggttagatttaagaggatcgttgatcttattatggtct 8383970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 179
Target Start/End: Complemental strand, 12881 - 12844
Alignment:
Q  142 gttgtttcccaccatgggaaagtaagttttgaccatta 179  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  12881 gttgtttcccaccatgggaaagttaattttgaccatta 12844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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