View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9836_low_14 (Length: 454)

Name: NF9836_low_14
Description: NF9836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9836_low_14
NF9836_low_14
[»] scaffold0115 (2 HSPs)
scaffold0115 (18-447)||(4927-5356)
scaffold0115 (18-447)||(12667-13096)
[»] chr1 (16 HSPs)
chr1 (100-447)||(19344528-19344880)
chr1 (234-430)||(13543394-13543590)
chr1 (234-430)||(13670554-13670750)
chr1 (234-430)||(15899066-15899262)
chr1 (342-430)||(13420896-13420984)
chr1 (237-430)||(13655150-13655343)
chr1 (234-420)||(13684810-13684996)
chr1 (234-430)||(20477522-20477718)
chr1 (234-420)||(13650088-13650274)
chr1 (366-431)||(16497144-16497209)
chr1 (100-161)||(13670828-13670889)
chr1 (100-165)||(19138033-19138098)
chr1 (109-161)||(13655424-13655476)
chr1 (109-165)||(13685070-13685126)
chr1 (109-165)||(15898936-15898992)
chr1 (109-161)||(20477796-20477848)
[»] chr4 (1 HSPs)
chr4 (241-447)||(8480020-8480226)
[»] chr3 (1 HSPs)
chr3 (155-231)||(328164-328240)
[»] scaffold0006 (8 HSPs)
scaffold0006 (234-430)||(168168-168364)
scaffold0006 (237-430)||(144911-145104)
scaffold0006 (234-430)||(218759-218955)
scaffold0006 (342-430)||(109919-110007)
scaffold0006 (100-161)||(110193-110254)
scaffold0006 (100-161)||(168442-168503)
scaffold0006 (100-161)||(219033-219094)
scaffold0006 (109-161)||(145185-145237)
[»] scaffold0069 (1 HSPs)
scaffold0069 (234-430)||(26548-26744)
[»] chr6 (2 HSPs)
chr6 (234-430)||(22283918-22284114)
chr6 (110-158)||(21814714-21814762)
[»] scaffold0068 (2 HSPs)
scaffold0068 (234-430)||(40858-41054)
scaffold0068 (100-162)||(40719-40781)
[»] chr2 (1 HSPs)
chr2 (234-430)||(38057711-38057907)
[»] scaffold0406 (2 HSPs)
scaffold0406 (342-430)||(7799-7887)
scaffold0406 (100-161)||(7554-7615)
[»] chr8 (1 HSPs)
chr8 (234-430)||(20814675-20814871)
[»] scaffold0012 (4 HSPs)
scaffold0012 (234-430)||(115768-115964)
scaffold0012 (109-161)||(116042-116094)
scaffold0012 (100-161)||(108225-108286)
scaffold0012 (342-430)||(107951-108039)


Alignment Details
Target: scaffold0115 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 18 - 447
Target Start/End: Original strand, 4927 - 5356
Alignment:
Q  18 aactaagtatttctagatgtgaacagcaagaggccacagaaagcgtaaacagataatctatgcttccacaatttacaagagatacattttctagattatg 117  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4927 aactaagtatttctagatgtgaacaacaagaggccacagaaagcggaaacagataatctatgcttccacaatttacaagagatacattttctagattatg 5026  T
Q  118 aaaactaagaatcccttgaggatccacactacatatatttttcagctttggcatttcactcaaagtgatttctttcagatttgttgcatcctctttactt 217  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5027 aaaactaagaatcctttgaggatccacactacatatatttttcagctttggcatttcactcaaagtgatttctttcagatttgttgcatcctctttactt 5126  T
Q  218 ccccttttcattggaatcaaatatctcttccactgaagcacaatttgtaatatctagcatctctagattattgtatgttttttacaatgaagaaggaaaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5127 ccccttttcattggaatcaaatatctcttccactgaagcacaatttgtaatatctagcatctctagattattgtatgttttttacaatgaagaaggaaaa 5226  T
Q  318 actgctgtgattttgtcacatttattcactttcaacgtcttcaatgagtcaaactggtggtgccatattgttttcaagttctccatgtcattcaatatga 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5227 actgctgtgattttgtcacatttattcactttcaacgtcttcaatgagtcaaactgatggtgccatattgttttcaagttctccatgtcattcaatatga 5326  T
Q  418 tttcctctaatttggagagtcgaacctatg 447  Q
    |||||||||||||||| |||||||||||||    
T  5327 tttcctctaatttggatagtcgaacctatg 5356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #2
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 18 - 447
Target Start/End: Original strand, 12667 - 13096
Alignment:
Q  18 aactaagtatttctagatgtgaacagcaagaggccacagaaagcgtaaacagataatctatgcttccacaatttacaagagatacattttctagattatg 117  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12667 aactaagtatttctagatgtgaacaacaagaggccacagaaagcggaaacagataatctatgcttccacaatttacaagagatacattttctagattatg 12766  T
Q  118 aaaactaagaatcccttgaggatccacactacatatatttttcagctttggcatttcactcaaagtgatttctttcagatttgttgcatcctctttactt 217  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12767 aaaactaagaatcctttgaggatccacactacatatatttttcagctttggcatttcactcaaagtgatttctttcagatttgttgcatcctctttactt 12866  T
Q  218 ccccttttcattggaatcaaatatctcttccactgaagcacaatttgtaatatctagcatctctagattattgtatgttttttacaatgaagaaggaaaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12867 ccccttttcattggaatcaaatatctcttccactgaagcacaatttgtaatatctagcatctctagattattgtatgttttttacaatgaagaaggaaaa 12966  T
Q  318 actgctgtgattttgtcacatttattcactttcaacgtcttcaatgagtcaaactggtggtgccatattgttttcaagttctccatgtcattcaatatga 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  12967 actgctgtgattttgtcacatttattcactttcaacgtcttcaatgagtcaaactgatggtgccatattgttttcaagttctccatgtcattcaatatga 13066  T
Q  418 tttcctctaatttggagagtcgaacctatg 447  Q
    |||||||||||||||| |||||||||||||    
T  13067 tttcctctaatttggatagtcgaacctatg 13096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 100 - 447
Target Start/End: Original strand, 19344528 - 19344880
Alignment:
Q  100 tacattttctagattatgaaaactaagaatcccttgaggatccacactacatatatttttcagctttggcatttcactcaaagtgatttctttcagattt 199  Q
    |||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  19344528 tacattttctagattatgaaaactaagaatcccttgaggatccatagtccatatattttttagctttggcattttactcaaagtgatttctttcagattt 19344627  T
Q  200 gttgcatcctctttacttccccttttcattggaat------caaatatctcttccactgaagcacaatttgtaatatctagcatctctagattattgtat 293  Q
    ||||||||||||||||||||| |||||| ||||||      |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  19344628 gttgcatcctctttacttccc-ttttcagtggaattcaattcaaatatctctttcactgaagcacagtttgtaatatctagcatctctagattattgtat 19344726  T
Q  294 gttttttacaatgaagaaggaaaaactgctgtgattttgtcacatttattcactttcaacgtcttcaatgagtcaaactggtggtgccatattgttttca 393  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  19344727 gttttttgcaatgaagaaggaaaaactactgtgattttgtcacatttattcactttcaacgtcttcaatgagtcaaactggcggtgccatattgtcttca 19344826  T
Q  394 agttctccatgtcattcaatatgatttcctctaatttggagagtcgaacctatg 447  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  19344827 agttctccatgtcattcaatatgatttcctctaatttggagaatcgaacctatg 19344880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 234 - 430
Target Start/End: Complemental strand, 13543590 - 13543394
Alignment:
Q  234 tcaaatatctcttccactgaagcacaatttgtaatatctagcatctctagattattgtatgttttttacaatgaagaaggaaaaactgctgtgattttgt 333  Q
    |||||||||||||| |||||| ||||||||||||  || | | |||| || ||||| ||||| || | || |||||||||||||||  |    ||||| |    
T  13543590 tcaaatatctcttcaactgaaacacaatttgtaacctccaacttctcaagcttattatatgtgttctgcattgaagaaggaaaaaccaccacaattttct 13543491  T
Q  334 cacatttattcactttcaacgtcttcaatgagtcaaactggtggtgccatattgttttcaagttctccatgtcattcaatatgatttcctctaattt 430  Q
     ||| || ||||||| |||| ||||  |||  ||||| ||||| ||||||||||| |||||||| ||||| || ||||||||||||| |||||||||    
T  13543490 tacaattgttcacttccaacatctttgatgtttcaaattggtgatgccatattgtcttcaagttgtccatatccttcaatatgattttctctaattt 13543394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 234 - 430
Target Start/End: Complemental strand, 13670750 - 13670554
Alignment:
Q  234 tcaaatatctcttccactgaagcacaatttgtaatatctagcatctctagattattgtatgttttttacaatgaagaaggaaaaactgctgtgattttgt 333  Q
    |||||||||||||| ||| || |||||||| |||  || | | ||||||| | ||||||||| |||| || |||||||||||||||  |    ||||| |    
T  13670750 tcaaatatctcttcaactaaatcacaatttctaacctccaacttctctagctcattgtatgtgttttgcattgaagaaggaaaaacaaccacaattttct 13670651  T
Q  334 cacatttattcactttcaacgtcttcaatgagtcaaactggtggtgccatattgttttcaagttctccatgtcattcaatatgatttcctctaattt 430  Q
     ||| || |||||||||||| ||||| |||  ||||| || || ||||||||||| |||||| | ||||| || ||||||||||||| |||||||||    
T  13670650 tacaattgttcactttcaacatcttcgatgtttcaaattgctgatgccatattgtcttcaagctgtccatatccttcaatatgattttctctaattt 13670554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 234 - 430
Target Start/End: Original strand, 15899066 - 15899262
Alignment:
Q  234 tcaaatatctcttccactgaagcacaatttgtaatatctagcatctctagattattgtatgttttttacaatgaagaaggaaaaactgctgtgattttgt 333  Q
    |||||||| ||||| ||||||||||||||| |||  || | |||||| || | ||| ||||| |||| || |||||||||||||||  |    ||||| |    
T  15899066 tcaaatatttcttcaactgaagcacaatttctaacctccaacatctcaagctcattatatgtgttttgcattgaagaaggaaaaaccaccacaattttct 15899165  T
Q  334 cacatttattcactttcaacgtcttcaatgagtcaaactggtggtgccatattgttttcaagttctccatgtcattcaatatgatttcctctaattt 430  Q
     ||| || ||||||| |||| |||||||||  | ||| ||||| ||||||| ||| |||||||| ||||| || ||||||||||||| |||||||||    
T  15899166 tacaattgttcacttccaacatcttcaatgttttaaattggtgatgccatactgtcttcaagttgtccatatccttcaatatgattttctctaattt 15899262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 342 - 430
Target Start/End: Complemental strand, 13420984 - 13420896
Alignment:
Q  342 ttcactttcaacgtcttcaatgagtcaaactggtggtgccatattgttttcaagttctccatgtcattcaatatgatttcctctaattt 430  Q
    ||||||| |||| |||||||||  ||||| ||||| ||||||||||| |||||||| ||||| || ||||||||||||| |||||||||    
T  13420984 ttcacttccaacatcttcaatgtttcaaattggtgatgccatattgtcttcaagttgtccatatccttcaatatgattttctctaattt 13420896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 237 - 430
Target Start/End: Complemental strand, 13655343 - 13655150
Alignment:
Q  237 aatatctcttccactgaagcacaatttgtaatatctagcatctctagattattgtatgttttttacaatgaagaaggaaaaactgctgtgattttgtcac 336  Q
    ||||||||||| ||| ||||||| ||||| |  || | | ||||||| | ||| ||||| |||| || |||||||||||||||  |    ||||| | ||    
T  13655343 aatatctcttcaactaaagcacagtttgtgacctccaacttctctagctcattatatgtgttttgcattgaagaaggaaaaaccaccacaattttcttac 13655244  T
Q  337 atttattcactttcaacgtcttcaatgagtcaaactggtggtgccatattgttttcaagttctccatgtcattcaatatgatttcctctaattt 430  Q
    | || ||||||| |||| |||||||||  ||||| ||||||||||||||||  |||||||| ||||| || |||| ||| |||| |||||||||    
T  13655243 aattgttcacttccaacatcttcaatgtttcaaattggtggtgccatattgacttcaagttgtccatatccttcagtataattttctctaattt 13655150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 234 - 420
Target Start/End: Complemental strand, 13684996 - 13684810
Alignment:
Q  234 tcaaatatctcttccactgaagcacaatttgtaatatctagcatctctagattattgtatgttttttacaatgaagaaggaaaaactgctgtgattttgt 333  Q
    |||||||||||||| ||| |||||||||||||||  || | | |||| || | ||| ||||| |||| || |||||||||||||||  |    ||||| |    
T  13684996 tcaaatatctcttcaactaaagcacaatttgtaacctccaacttctcaagctcattatatgtgttttgcattgaagaaggaaaaaccaccacaattttct 13684897  T
Q  334 cacatttattcactttcaacgtcttcaatgagtcaaactggtggtgccatattgttttcaagttctccatgtcattcaatatgattt 420  Q
     ||| || ||||||| |||| ||||||||   ||||| ||| | ||||||||||| |||||||| | ||| || |||||||||||||    
T  13684896 tacaattgttcacttccaacatcttcaatatttcaaattggcgatgccatattgtcttcaagttgttcatatccttcaatatgattt 13684810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 234 - 430
Target Start/End: Complemental strand, 20477718 - 20477522
Alignment:
Q  234 tcaaatatctcttccactgaagcacaatttgtaatatctagcatctctagattattgtatgttttttacaatgaagaaggaaaaactgctgtgattttgt 333  Q
    |||||||||||||| ||| ||||||||||| |||  || | | |||| || | ||| ||||| |||| || |||||||||||||||  |    ||||| |    
T  20477718 tcaaatatctcttcaactaaagcacaatttctaacctccaacttctcaagctcattatatgtgttttgcattgaagaaggaaaaaccaccacaattttct 20477619  T
Q  334 cacatttattcactttcaacgtcttcaatgagtcaaactggtggtgccatattgttttcaagttctccatgtcattcaatatgatttcctctaattt 430  Q
     ||| || ||||||| |||| ||||| |||  ||||| ||  | ||||||||||| |||||| | ||||| || ||||||||||||| |||||||||    
T  20477618 tacaattgttcacttccaacatcttcgatgtttcaaattgccgatgccatattgtcttcaagctgtccatatccttcaatatgattttctctaattt 20477522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 420
Target Start/End: Complemental strand, 13650274 - 13650088
Alignment:
Q  234 tcaaatatctcttccactgaagcacaatttgtaatatctagcatctctagattattgtatgttttttacaatgaagaaggaaaaactgctgtgattttgt 333  Q
    |||||||||||||| ||| |||||||||||||||  || | | |||| || | ||| ||||| |||| || |||||||||||||||  |    ||||| |    
T  13650274 tcaaatatctcttcaactaaagcacaatttgtaacctccaacttctcaagctcattatatgtattttgcattgaagaaggaaaaaccaccacaattttct 13650175  T
Q  334 cacatttattcactttcaacgtcttcaatgagtcaaactggtggtgccatattgttttcaagttctccatgtcattcaatatgattt 420  Q
     ||| || ||||||| |||| ||||  |||  ||||| ||||  ||||||||||| |||||| | ||||| || |||||||||||||    
T  13650174 tacaattgttcacttccaacatcttggatgtttcaaattggtaatgccatattgtcttcaagctgtccatatccttcaatatgattt 13650088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 366 - 431
Target Start/End: Original strand, 16497144 - 16497209
Alignment:
Q  366 tcaaactggtggtgccatattgttttcaagttctccatgtcattcaatatgatttcctctaatttg 431  Q
    ||||| || |||| ||||||||| |||||||| |||||||| ||||||||||||| ||| ||||||    
T  16497144 tcaaattgatggtaccatattgtcttcaagttgtccatgtccttcaatatgattttctccaatttg 16497209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 161
Target Start/End: Complemental strand, 13670889 - 13670828
Alignment:
Q  100 tacattttctagattatgaaaactaagaatcccttgaggatccacactacatatatttttca 161  Q
    |||||||  |||||| |||||||||||||| |||||||||||  |||| ||||| |||||||    
T  13670889 tacatttattagattttgaaaactaagaattccttgaggatcttcactccatatctttttca 13670828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 165
Target Start/End: Original strand, 19138033 - 19138098
Alignment:
Q  100 tacattttctagattatgaaaactaagaatcccttgaggatccacactacatatatttttcagctt 165  Q
    |||||||  |||||| |||||||||||||| |||||||||||   ||| ||||| |||||||||||    
T  19138033 tacatttattagattttgaaaactaagaattccttgaggatctctactccatatctttttcagctt 19138098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 161
Target Start/End: Complemental strand, 13655476 - 13655424
Alignment:
Q  109 tagattatgaaaactaagaatcccttgaggatccacactacatatatttttca 161  Q
    |||||| |||||||||||||| |||||||||||  |||| ||||| |||||||    
T  13655476 tagattttgaaaactaagaattccttgaggatctccactccatatctttttca 13655424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 13685126 - 13685070
Alignment:
Q  109 tagattatgaaaactaagaatcccttgaggatccacactacatatatttttcagctt 165  Q
    |||||| |||||||||||||| |||| ||||||  |||| ||||| |||||||||||    
T  13685126 tagattttgaaaactaagaattccttcaggatctccactccatatctttttcagctt 13685070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 15898936 - 15898992
Alignment:
Q  109 tagattatgaaaactaagaatcccttgaggatccacactacatatatttttcagctt 165  Q
    |||||| |||||||||||||| |||||||||||  |||| ||||| || ||||||||    
T  15898936 tagattttgaaaactaagaattccttgaggatctccactccatatcttgttcagctt 15898992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 161
Target Start/End: Complemental strand, 20477848 - 20477796
Alignment:
Q  109 tagattatgaaaactaagaatcccttgaggatccacactacatatatttttca 161  Q
    |||||| |||||||||||||| |||||||||||  |||| ||||| |||||||    
T  20477848 tagattttgaaaactaagaattccttgaggatctccactccatatctttttca 20477796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 241 - 447
Target Start/End: Original strand, 8480020 - 8480226
Alignment:
Q  241 tctcttccactgaagcacaatttgtaatatctagcatctctagattattgtatgttttttacaatgaagaaggaaaaactgctgtgattttgtcacattt 340  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8480020 tctcctccactgaagcacaatttgtaatatttagcatctctagattattgtatgttttttacaatgaagaaggaaaaactgctgtgattttgtcacattt 8480119  T
Q  341 attcactttcaacgtcttcaatgagtcaaactggtggtgccatattgttttcaagttctccatgtcattcaatatgatttcctctaatttggagagtcga 440  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8480120 attcactttcaacgtcttcaatgagtcaaactggtggtgccatattgtcttcaagttctccatgtcattcaatatgatttcctctaatttggagagtcga 8480219  T
Q  441 acctatg 447  Q
    |||||||    
T  8480220 acctatg 8480226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 155 - 231
Target Start/End: Original strand, 328164 - 328240
Alignment:
Q  155 tttttcagctttggcatttcactcaaagtgatttctttcagatttgttgcatcctctttacttccccttttcattgg 231  Q
    ||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||| |||||||||||||    
T  328164 tttttcagctttggcatttcagtcaaagtgatttaattcagatttgttgcatcctctttacttacccttttcattgg 328240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 49; Significance: 7e-19; HSPs: 8)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 234 - 430
Target Start/End: Complemental strand, 168364 - 168168
Alignment:
Q  234 tcaaatatctcttccactgaagcacaatttgtaatatctagcatctctagattattgtatgttttttacaatgaagaaggaaaaactgctgtgattttgt 333  Q
    |||||||||||||| ||| || |||||||| |||  || | | ||||||| | ||||||||| |||| || |||||||||||||||  |    ||||| |    
T  168364 tcaaatatctcttcaactaaatcacaatttctaacctccaacttctctagctcattgtatgtgttttgcattgaagaaggaaaaacaaccacaattttct 168265  T
Q  334 cacatttattcactttcaacgtcttcaatgagtcaaactggtggtgccatattgttttcaagttctccatgtcattcaatatgatttcctctaattt 430  Q
     ||| || |||||||||||| ||||| |||  ||||| || || ||||||||||| |||||| | ||||| || ||||||||||||| |||||||||    
T  168264 tacaattgttcactttcaacatcttcgatgtttcaaattgctgatgccatattgtcttcaagctgtccatatccttcaatatgattttctctaattt 168168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 237 - 430
Target Start/End: Complemental strand, 145104 - 144911
Alignment:
Q  237 aatatctcttccactgaagcacaatttgtaatatctagcatctctagattattgtatgttttttacaatgaagaaggaaaaactgctgtgattttgtcac 336  Q
    ||||||||||| ||| ||||||| ||||| |  || | | ||||||| | ||| ||||| |||| || |||||||||||||||  |    ||||| | ||    
T  145104 aatatctcttcaactaaagcacagtttgtgacctccaacttctctagctcattatatgtgttttgcattgaagaaggaaaaaccaccacaattttcttac 145005  T
Q  337 atttattcactttcaacgtcttcaatgagtcaaactggtggtgccatattgttttcaagttctccatgtcattcaatatgatttcctctaattt 430  Q
    | || ||||||| |||| |||||||||  ||||| ||||||||||||||||  |||||||| ||||| || |||| ||| |||| |||||||||    
T  145004 aattgttcacttccaacatcttcaatgtttcaaattggtggtgccatattgacttcaagttgtccatatccttcagtataattttctctaattt 144911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 234 - 430
Target Start/End: Complemental strand, 218955 - 218759
Alignment:
Q  234 tcaaatatctcttccactgaagcacaatttgtaatatctagcatctctagattattgtatgttttttacaatgaagaaggaaaaactgctgtgattttgt 333  Q
    |||||||||||||| ||| || |||||||| |||  || | | |||| || | ||| ||||| |||| || |||||||||||||||  |    |||||||    
T  218955 tcaaatatctcttcaactaaatcacaatttctaacctccaacttctcaagctcattatatgtgttttgcattgaagaaggaaaaaccaccacaattttgt 218856  T
Q  334 cacatttattcactttcaacgtcttcaatgagtcaaactggtggtgccatattgttttcaagttctccatgtcattcaatatgatttcctctaattt 430  Q
     ||| || ||| ||| |||| ||||| |||  ||||| ||||| ||||||||||| |||||| | ||||| || |||||||| |||| |||||||||    
T  218855 tacaattgttcgcttccaacatcttcgatgtttcaaattggtgatgccatattgtcttcaagctgtccatatccttcaatataattttctctaattt 218759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 430
Target Start/End: Complemental strand, 110007 - 109919
Alignment:
Q  342 ttcactttcaacgtcttcaatgagtcaaactggtggtgccatattgttttcaagttctccatgtcattcaatatgatttcctctaattt 430  Q
    ||||||| |||| ||||| |||  ||||| ||||| ||||||||||| |||||| | ||||| || || |||||||||| |||||||||    
T  110007 ttcacttccaacatcttcgatgtttcaaattggtgatgccatattgtcttcaagatgtccatatccttaaatatgattttctctaattt 109919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 161
Target Start/End: Complemental strand, 110254 - 110193
Alignment:
Q  100 tacattttctagattatgaaaactaagaatcccttgaggatccacactacatatatttttca 161  Q
    |||||||  |||||| |||||||||||||| |||||||||||  |||| ||||| |||||||    
T  110254 tacatttattagattttgaaaactaagaattccttgaggatctccactccatatctttttca 110193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 161
Target Start/End: Complemental strand, 168503 - 168442
Alignment:
Q  100 tacattttctagattatgaaaactaagaatcccttgaggatccacactacatatatttttca 161  Q
    |||||||  |||||| |||||||||||||| |||||||||||  |||| ||||| |||||||    
T  168503 tacatttattagattttgaaaactaagaattccttgaggatcttcactccatatctttttca 168442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 161
Target Start/End: Complemental strand, 219094 - 219033
Alignment:
Q  100 tacattttctagattatgaaaactaagaatcccttgaggatccacactacatatatttttca 161  Q
    |||||||  |||||| |||||||||||||| |||||||||||  |||| ||||| |||||||    
T  219094 tacatttattagattttgaaaactaagaattccttgaggatctgcactccatatctttttca 219033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 161
Target Start/End: Complemental strand, 145237 - 145185
Alignment:
Q  109 tagattatgaaaactaagaatcccttgaggatccacactacatatatttttca 161  Q
    |||||| |||||||||||||| |||||||||||  |||| ||||| |||||||    
T  145237 tagattttgaaaactaagaattccttgaggatctccactccatatctttttca 145185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 234 - 430
Target Start/End: Complemental strand, 26744 - 26548
Alignment:
Q  234 tcaaatatctcttccactgaagcacaatttgtaatatctagcatctctagattattgtatgttttttacaatgaagaaggaaaaactgctgtgattttgt 333  Q
    |||||||||||||| ||| |||||||||||||||  || | | |||| || | ||| ||||| |||| || |||||||||||||||  |    ||||| |    
T  26744 tcaaatatctcttcaactaaagcacaatttgtaacctccaacttctcaagctcattatatgtattttgcattgaagaaggaaaaaccaccacaattttct 26645  T
Q  334 cacatttattcactttcaacgtcttcaatgagtcaaactggtggtgccatattgttttcaagttctccatgtcattcaatatgatttcctctaattt 430  Q
     ||| || ||||||| |||| ||||| |||  ||||| ||||  ||||||||||| |||||| | ||||| || ||||||||||||| |||||||||    
T  26644 tacaattgttcacttccaacatcttcgatgtttcaaattggtaatgccatattgtcttcaagctgtccatatccttcaatatgattttctctaattt 26548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 234 - 430
Target Start/End: Original strand, 22283918 - 22284114
Alignment:
Q  234 tcaaatatctcttccactgaagcacaatttgtaatatctagcatctctagattattgtatgttttttacaatgaagaaggaaaaactgctgtgattttgt 333  Q
    |||||||||||||| ||| |||||||||||||||  || | | |||| |||| ||| ||||| |||| || |||||||||||||||  |    ||||| |    
T  22283918 tcaaatatctcttcaactaaagcacaatttgtaacctccaacttctcaagatcattatatgtgttttgcactgaagaaggaaaaacaaccacaattttct 22284017  T
Q  334 cacatttattcactttcaacgtcttcaatgagtcaaactggtggtgccatattgttttcaagttctccatgtcattcaatatgatttcctctaattt 430  Q
     ||| || ||||||| |||| |||||||||  | ||| ||| | ||||||||||| |||||||| ||||| || |||| || ||||| |||||||||    
T  22284018 tacaattgttcacttccaacatcttcaatgttttaaattggggatgccatattgtcttcaagttgtccatatccttcagtaagattttctctaattt 22284114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 21814762 - 21814714
Alignment:
Q  110 agattatgaaaactaagaatcccttgaggatccacactacatatatttt 158  Q
    ||||| ||||||||||||||||||||||||||  |||| ||||| ||||    
T  21814762 agattttgaaaactaagaatcccttgaggatcttcactccatatctttt 21814714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 234 - 430
Target Start/End: Original strand, 40858 - 41054
Alignment:
Q  234 tcaaatatctcttccactgaagcacaatttgtaatatctagcatctctagattattgtatgttttttacaatgaagaaggaaaaactgctgtgattttgt 333  Q
    |||||||||| ||| ||| || ||||||||||||  || | | |||| || | ||||||||| |||| || |||||||||||||||  |    ||||| |    
T  40858 tcaaatatctgttcaactaaatcacaatttgtaacctccaacttctcaagctcattgtatgtgttttgcactgaagaaggaaaaaccaccacaattttct 40957  T
Q  334 cacatttattcactttcaacgtcttcaatgagtcaaactggtggtgccatattgttttcaagttctccatgtcattcaatatgatttcctctaattt 430  Q
     ||| || ||||||| |||  |||||||||  ||||| ||||| ||||||||||| |||||||| | ||| || |||| |||||||| |||||||||    
T  40958 tacaattgttcacttccaaaatcttcaatgtttcaaattggtgatgccatattgtcttcaagttgttcatatccttcagtatgattttctctaattt 41054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 162
Target Start/End: Original strand, 40719 - 40781
Alignment:
Q  100 tacattttctagattatgaaaactaagaatcccttgaggatccacactacatatatttttcag 162  Q
    |||||||  |||||| |||||||||||||| |||||||||||  |||| ||||| ||||||||    
T  40719 tacatttattagattttgaaaactaagaattccttgaggatctccactccatatctttttcag 40781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 234 - 430
Target Start/End: Original strand, 38057711 - 38057907
Alignment:
Q  234 tcaaatatctcttccactgaagcacaatttgtaatatctagcatctctagattattgtatgttttttacaatgaagaaggaaaaactgctgtgattttgt 333  Q
    |||||||||||||| ||| ||||||||||| |||  || | | | ||||| | | | |||||||||| ||||||||||||||||||  |    ||||| |    
T  38057711 tcaaatatctcttcaactaaagcacaatttctaacctccaacttttctagctcaatatatgttttttgcaatgaagaaggaaaaaccaccacaattttct 38057810  T
Q  334 cacatttattcactttcaacgtcttcaatgagtcaaactggtggtgccatattgttttcaagttctccatgtcattcaatatgatttcctctaattt 430  Q
      || || ||||||| |||| |||||||||  | ||| ||||  ||||||||||| |||||||| ||||| || |||||||||||||  ||||||||    
T  38057811 tgcaattgttcacttgcaacatcttcaatgttttaaattggtaatgccatattgtcttcaagttgtccatatccttcaatatgattttttctaattt 38057907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 430
Target Start/End: Original strand, 7799 - 7887
Alignment:
Q  342 ttcactttcaacgtcttcaatgagtcaaactggtggtgccatattgttttcaagttctccatgtcattcaatatgatttcctctaattt 430  Q
    ||||||| |||| ||||| |||  ||||| ||||| ||||||||||| |||||||| ||||| || |||| |||||||| |||||||||    
T  7799 ttcacttccaacatcttcgatgtttcaaattggtgatgccatattgtcttcaagttgtccatatccttcagtatgattttctctaattt 7887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 100 - 161
Target Start/End: Original strand, 7554 - 7615
Alignment:
Q  100 tacattttctagattatgaaaactaagaatcccttgaggatccacactacatatatttttca 161  Q
    |||||||  |||||| ||||||||||||||||||||||||||  |||| ||||| |||||||    
T  7554 tacatttattagattttgaaaactaagaatcccttgaggatcttcactccatatctttttca 7615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 234 - 430
Target Start/End: Original strand, 20814675 - 20814871
Alignment:
Q  234 tcaaatatctcttccactgaagcacaatttgtaatatctagcatctctagattattgtatgttttttacaatgaagaaggaaaaactgctgtgattttgt 333  Q
    |||||||||||||| |||||| ||||||||||||  || | | |||| || | ||| |||||  ||| || |||||||||||||||  |    ||||| |    
T  20814675 tcaaatatctcttcaactgaatcacaatttgtaacctccaacttctcaagctcattatatgtaatttgcattgaagaaggaaaaaccaccacaattttct 20814774  T
Q  334 cacatttattcactttcaacgtcttcaatgagtcaaactggtggtgccatattgttttcaagttctccatgtcattcaatatgatttcctctaattt 430  Q
     ||| || ||||||| |||| ||||| |||  ||||| ||||  ||||||||||| |||||| | ||||| || |||| |||||||| |||||||||    
T  20814775 tacaattgttcacttccaacatcttcgatgtttcaaattggtaatgccatattgtcttcaagctgtccatatccttcagtatgattttctctaattt 20814871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 430
Target Start/End: Complemental strand, 115964 - 115768
Alignment:
Q  234 tcaaatatctcttccactgaagcacaatttgtaatatctagcatctctagattattgtatgttttttacaatgaagaaggaaaaactgctgtgattttgt 333  Q
    |||||||||||||| ||| || |||||||| |||  || | | |||| || | ||| ||||| |||| || |||||||||||||||  |    ||||| |    
T  115964 tcaaatatctcttcaactaaatcacaatttctaacctccaacttctcaagctcattatatgtgttttgcattgaagaaggaaaaaccaccacaattttct 115865  T
Q  334 cacatttattcactttcaacgtcttcaatgagtcaaactggtggtgccatattgttttcaagttctccatgtcattcaatatgatttcctctaattt 430  Q
     ||| || ||||||| |||| ||||| |||  ||||| ||  | ||||||||||| |||||| | ||||| || ||||||||||||| |||||||||    
T  115864 tacaattgttcacttccaacatcttcgatgtttcaaattgccgatgccatattgtcttcaagctgtccatatccttcaatatgattttctctaattt 115768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 161
Target Start/End: Complemental strand, 116094 - 116042
Alignment:
Q  109 tagattatgaaaactaagaatcccttgaggatccacactacatatatttttca 161  Q
    |||||| |||||||||||||| |||| ||||||  ||||||||||||||||||    
T  116094 tagattttgaaaactaagaattccttcaggatctccactacatatatttttca 116042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 161
Target Start/End: Complemental strand, 108286 - 108225
Alignment:
Q  100 tacattttctagattatgaaaactaagaatcccttgaggatccacactacatatatttttca 161  Q
    |||||||  |||||| |||||||||||||| |||||||||||  |||| ||||| |||||||    
T  108286 tacatttattagattttgaaaactaagaattccttgaggatcttcactccatatctttttca 108225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 430
Target Start/End: Complemental strand, 108039 - 107951
Alignment:
Q  342 ttcactttcaacgtcttcaatgagtcaaactggtggtgccatattgttttcaagttctccatgtcattcaatatgatttcctctaattt 430  Q
    ||||||| |||| ||||||||   ||||| ||||||||||||||||  |||||||| | ||| || || | |||||||| |||||||||    
T  108039 ttcacttccaacatcttcaatttttcaaattggtggtgccatattgacttcaagttgtacatatccttgagtatgattttctctaattt 107951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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