View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9836_low_15 (Length: 450)

Name: NF9836_low_15
Description: NF9836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9836_low_15
NF9836_low_15
[»] chr3 (15 HSPs)
chr3 (31-285)||(24369920-24370175)
chr3 (6-189)||(24358699-24358882)
chr3 (28-168)||(24364401-24364541)
chr3 (186-285)||(24358564-24358664)
chr3 (186-285)||(24364627-24364727)
chr3 (22-172)||(24355617-24355762)
chr3 (22-172)||(24362479-24362629)
chr3 (361-444)||(24358408-24358491)
chr3 (213-285)||(24354902-24354974)
chr3 (10-124)||(24346558-24346672)
chr3 (366-445)||(24364808-24364887)
chr3 (361-423)||(24313932-24313994)
chr3 (370-445)||(24354745-24354820)
chr3 (370-444)||(24344474-24344548)
chr3 (401-445)||(24351660-24351704)


Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 31 - 285
Target Start/End: Complemental strand, 24370175 - 24369920
Alignment:
Q  31 atgagaattgtgaaaaaaggattgcatgagatgaaattttgagcaacttcctgagctctaacatcctttggccaattgattgatgaagttcttttagaag 130  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||    
T  24370175 atgagaattgtgaaaaatggattgcatgagatgaaattttgagcaacttcctgagctctaacatcctttggccaattcattgatgaagttcttttagtag 24370076  T
Q  131 tcttctcatcatcacctgcatatatgtgtgaaatgtaaaacatcgaagaaactcttgaaaagaaaatcaagaaaccaaacc-aacctcgaactttcttat 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  24370075 tcttctcatcatcacctgcatatatgtgtgaaatgtaaaacatcgaagaaactcttgaaaagaaaatcaagaaaccaaaccaaaccttgaactttcttat 24369976  T
Q  230 gtggtcgaggagaaacgaaaggcgatctttgtctagccttcttccgattaagccat 285  Q
    ||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||    
T  24369975 gtggtcgagaagaaacaaaaggtgatctttgtctagccttcttccgattaagccat 24369920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 6 - 189
Target Start/End: Complemental strand, 24358882 - 24358699
Alignment:
Q  6 actatctgctatatggttaggttttatgagaattgtgaaaaaaggattgcatgagatgaaattttgagcaacttcctgagctctaacatcctttggccaa 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||| |||||||||||||||||||||||||    
T  24358882 actatctgctatatggttaggttttatgagaattgtgaaaaaaggattgtttgagatgaaattttgagctactttctgagctctaacatcctttggccaa 24358783  T
Q  106 ttgattgatgaagttcttttagaagtcttctcatcatcacctgcatatatgtgtgaaatgtaaaacatcgaagaaactcttgaa 189  Q
    || ||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||| ||  |||||||||||||||    
T  24358782 tttattgatgaagttcttttagtagtcttctcatcatcacctgcatatatgcgtgcaatgtaaatcaaagaagaaactcttgaa 24358699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 28 - 168
Target Start/End: Original strand, 24364401 - 24364541
Alignment:
Q  28 tttatgagaattgtgaaaaaaggattgcatgagatgaaattttgagcaacttcctgagctctaacatcctttggccaattgattgatgaagttcttttag 127  Q
    |||||||||| ||| || ||||||||||||||||||||||||||||| ||||||||||||||| ||| ||| ||||| || |||||||||||||||||||    
T  24364401 tttatgagaactgtaaagaaaggattgcatgagatgaaattttgagctacttcctgagctctagcattcttcggccagtttattgatgaagttcttttag 24364500  T
Q  128 aagtcttctcatcatcacctgcatatatgtgtgaaatgtaa 168  Q
     ||||||||||| ||| |||||||||||||||| |||||||    
T  24364501 tagtcttctcatgatctcctgcatatatgtgtgcaatgtaa 24364541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 186 - 285
Target Start/End: Complemental strand, 24358664 - 24358564
Alignment:
Q  186 tgaaaagaaaatcaagaaaccaaaccaa-cctcgaactttcttatgtggtcgaggagaaacgaaaggcgatctttgtctagccttcttccgattaagcca 284  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||    
T  24358664 tgaaaagaaaatcaagaaaccaaaccaaacctcgaacttttttatgtggtcgaggagaaacgaaaggtgatctttgtttagccttcttccaattaagcca 24358565  T
Q  285 t 285  Q
    |    
T  24358564 t 24358564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 186 - 285
Target Start/End: Original strand, 24364627 - 24364727
Alignment:
Q  186 tgaaaagaaaatcaagaaaccaaaccaa-cctcgaactttcttatgtggtcgaggagaaacgaaaggcgatctttgtctagccttcttccgattaagcca 284  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||  ||||| ||||||||||||||||||||||||||||||||    
T  24364627 tgaaaagaaaatcaagaaaccaaaccaaacctcgaactttcttatgtggtcgagtagaaataaaaggtgatctttgtctagccttcttccgattaagcca 24364726  T
Q  285 t 285  Q
    |    
T  24364727 t 24364727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 22 - 172
Target Start/End: Complemental strand, 24355762 - 24355617
Alignment:
Q  22 ttaggttttatgagaattgtgaaaaaaggattgcatgagatgaaattttgagcaacttcctgagctctaacatcct-ttggccaattgattgatgaagtt 120  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||| ||||||||     ||||||||||    
T  24355762 ttaggcttgatgagaattgtgaaaaaaggattgcatgagatgaaattttgagctacttcctgagctctagc-tcctcttggccaa-----tgatgaagtt 24355669  T
Q  121 cttttagaagtcttctcatcatcacctgcatatatgtgtgaaatgtaaaaca 172  Q
    ||||||| ||| |||| |   ||||||||||||||||||| ||| |||||||    
T  24355668 cttttagcagttttcttaatctcacctgcatatatgtgtggaatataaaaca 24355617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 22 - 172
Target Start/End: Complemental strand, 24362629 - 24362479
Alignment:
Q  22 ttaggttttatgagaattgtgaaaaaaggattgcatgagatgaaattttgagcaacttcctgagctctaacatcctttggccaattgattgatgaagttc 121  Q
    ||||| |||||||||||||||||||||||||||| ||||||||| |||  ||| |||||  |||||||| |  || | |||||||| | ||||| |||||    
T  24362629 ttaggctttatgagaattgtgaaaaaaggattgcttgagatgaattttgcagctacttctcgagctctagctcccataggccaattcaatgatgtagttc 24362530  T
Q  122 ttttagaagtcttctcatcatcacctgcatatatgtgtgaaatgtaaaaca 172  Q
    ||| || |||||||| |   ||||||||||||||||||||||| |||||||    
T  24362529 tttcagtagtcttcttaatctcacctgcatatatgtgtgaaatataaaaca 24362479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 361 - 444
Target Start/End: Complemental strand, 24358491 - 24358408
Alignment:
Q  361 gaagaataatctatttctactgcattccggtcaaatatgtgtacatcaaacatggaagttcctccatattcaaacaccaccaaa 444  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||| |  |||||||||||| ||||||    
T  24358491 gaagaataatctatttctactgcattccggccaaaaatgtgtacatcaaacttggaagttcttttatattcaaacacaaccaaa 24358408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 213 - 285
Target Start/End: Complemental strand, 24354974 - 24354902
Alignment:
Q  213 acctcgaactttcttatgtggtcgaggagaaacgaaaggcgatctttgtctagccttcttccgattaagccat 285  Q
    ||||| |||||||||||| |||||||||||||||||||| |||||||||||||| |||||| |||||||||||    
T  24354974 acctctaactttcttatgaggtcgaggagaaacgaaaggtgatctttgtctagcattcttctgattaagccat 24354902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 10 - 124
Target Start/End: Complemental strand, 24346672 - 24346558
Alignment:
Q  10 tctgctatatggttaggttttatgagaattgtgaaaaaaggattgcatgagatgaaattttgagcaacttcctgagctctaacatcctttggccaattga 109  Q
    ||||||| |||  |||| |||||||||||||||||||||||||||  ||||||||| |||  ||| ||||||||||||||| |  |||||||||||||      
T  24346672 tctgctagatgagtagggtttatgagaattgtgaaaaaaggattggttgagatgaattttaaagctacttcctgagctctagctccctttggccaattcc 24346573  T
Q  110 ttgatgaagttcttt 124  Q
     ||||| ||||||||    
T  24346572 atgatgtagttcttt 24346558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 366 - 445
Target Start/End: Original strand, 24364808 - 24364887
Alignment:
Q  366 ataatctatttctactgcattccggtcaaatatgtgtacatcaaacatggaagttcctccatattcaaacaccaccaaac 445  Q
    |||||||||||||||||||||| || ||| |||   |||||||||| |||||||||||  ||||||||||| ||||||||    
T  24364808 ataatctatttctactgcattctggccaagtattactacatcaaacttggaagttcctttatattcaaacatcaccaaac 24364887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 361 - 423
Target Start/End: Complemental strand, 24313994 - 24313932
Alignment:
Q  361 gaagaataatctatttctactgcattccggtcaaatatgtgtacatcaaacatggaagttcct 423  Q
    ||||||||||||||||||| ||||||| |||||| |||| ||||||||||| | |||||||||    
T  24313994 gaagaataatctatttctagtgcattctggtcaagtatgagtacatcaaactttgaagttcct 24313932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 445
Target Start/End: Complemental strand, 24354820 - 24354745
Alignment:
Q  370 tctatttctactgcattccggtcaaatatgtgtacatcaaacatggaagttcctccatattcaaacaccaccaaac 445  Q
    |||||||||||||||||| || ||| |||||||||||||||| | |||  ||||  |||||  |||||||||||||    
T  24354820 tctatttctactgcattctggccaagtatgtgtacatcaaactttgaatctcctttatatttgaacaccaccaaac 24354745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 444
Target Start/End: Complemental strand, 24344548 - 24344474
Alignment:
Q  370 tctatttctactgcattccggtcaaatatgtgtacatcaaacatggaagttcctccatattcaaacaccaccaaa 444  Q
    ||||||||||||||||||||  ||| |||   |||||||||  | |||||||||  |||||||||||||||||||    
T  24344548 tctatttctactgcattccgaccaagtattactacatcaaatttcgaagttcctttatattcaaacaccaccaaa 24344474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 401 - 445
Target Start/End: Complemental strand, 24351704 - 24351660
Alignment:
Q  401 gtacatcaaacatggaagttcctccatattcaaacaccaccaaac 445  Q
    ||||||||||| |||||||||||  ||||| ||||||||||||||    
T  24351704 gtacatcaaacttggaagttcctttatatttaaacaccaccaaac 24351660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University