View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9836_low_16 (Length: 444)
Name: NF9836_low_16
Description: NF9836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9836_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 47266490 - 47266715
Alignment:
| Q |
18 |
aggttttagagatggaaactgacatactcaagaccctagataatgatctggccagtcccactgttaagacttttttaaggcaagagattgccaaatctgt |
117 |
Q |
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| T |
47266490 |
aggttttagagatggaaactgacatacttaagaccctagataatgatctgggcagtcccactgttaagacttttttaaggcaagagattgccaaatctgt |
47266589 |
T |
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| Q |
118 |
ttattaattattttgtttttgaaaatgtcaattatgttaagaaaattgaaaagacaatagactaattattgtagtttctgtgatacaggaggtttaatga |
217 |
Q |
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| T |
47266590 |
ttattaattattttgtttttgaaaatgtcaattatgttaagaaaatcgaaaagacaatagactaattattgtagtttctgtgatacaggaggtttaatga |
47266689 |
T |
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| Q |
218 |
aattgtctgtaagaagaaaaacgtga |
243 |
Q |
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| T |
47266690 |
aattgtctgtaagaagaaaaacgtga |
47266715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 343 - 431
Target Start/End: Original strand, 47266815 - 47266903
Alignment:
| Q |
343 |
aggcttcaaatttgcagtttgaatttctaagtaactatcttgctgagctaagtttattggattatgcttgtgtgaggttcttgccttct |
431 |
Q |
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| T |
47266815 |
aggcttcaaatttgcagtttgaatttctaagtaactatcttgctgagctaagtttattggattatgcttgtgtgaggttcttgccttct |
47266903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 25 - 153
Target Start/End: Original strand, 47258915 - 47259043
Alignment:
| Q |
25 |
agagatggaaactgacatactcaagaccctagataatgatctggccagtcccactgttaagacttttttaaggcaagagattgccaaatctgtttattaa |
124 |
Q |
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| T |
47258915 |
agagatggaaaataaaatactcaagaccctagattttgatctgagcaaccctactgttatgacttttctaaggcaagaaagtgccaaatctgtttgttag |
47259014 |
T |
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| Q |
125 |
ttattttgtttttgaaaatgtcaattatg |
153 |
Q |
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| T |
47259015 |
ttattctgtttttggaaatgtcatttatg |
47259043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 347 - 431
Target Start/End: Original strand, 47259223 - 47259307
Alignment:
| Q |
347 |
ttcaaatttgcagtttgaatttctaagtaactatcttgctgagctaagtttattggattatgcttgtgtgaggttcttgccttct |
431 |
Q |
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| T |
47259223 |
ttcatatttgcagtttgagttcttgactaattatcttgctgagctaagtttattggattatgattgtttgagcttcttgccttct |
47259307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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