View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9836_low_17 (Length: 443)
Name: NF9836_low_17
Description: NF9836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9836_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 426
Target Start/End: Complemental strand, 2517364 - 2516944
Alignment:
| Q |
1 |
gggaggtgaaattttgggtggcgtagatatctctttgtgtgggaaacggagctagtgggtaacttggtggtattgttggaggggatagtgataggtgaag |
100 |
Q |
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| T |
2517364 |
gggagttgaaatttcgggtggcgtagagatctctttgtgtgggaaacggagctagtgggtaacttggtggtaatgttggaggggatagtgataggtgaag |
2517265 |
T |
|
| Q |
101 |
ggagagacgagtgggggtgggagccggagggtatgtttctcagtgaattctagttacaagaaacttgagaggttgtttttgttggatggtaatttatcca |
200 |
Q |
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| T |
2517264 |
agagagacgagtgggggtggaggctggagggtatgtttctcagtgaattctagttacaagcaacctgagaggttgtatttgttggatggtaatttatccg |
2517165 |
T |
|
| Q |
201 |
aagacgaggagcttgtgtttggtggccttcggaagagtggggctccgtctaaagggctagcatttgcttggacattgttacttgaccgcattccgacaag |
300 |
Q |
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| T |
2517164 |
aagacgaggagcttgtgtttggtggccttcggaagagtggggctccgtttaaagggctagcattcgcttggacattgttacttgaccgcattccgacgag |
2517065 |
T |
|
| Q |
301 |
ggtgaatctagctattatattcaaggagttttgaacgcggatgcatcgaagagttgtgtgttttgtgggaggatggaggaaacggctctacaccnnnnnn |
400 |
Q |
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| T |
2517064 |
ggtgaatctagc-----tattcaaggagttttgaacgcggatgcatcgaagagttgtgtgttttgtgggaggatggaggaaacaattctacacctttttt |
2516970 |
T |
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| Q |
401 |
ngcattgtgaagtggtggcgaaggtg |
426 |
Q |
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| T |
2516969 |
tgcattgtgaagtggtggcgaaggtg |
2516944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 21018491 - 21018874
Alignment:
| Q |
1 |
gggaggtgaaattttgggtggcgtagatatctctttgtgtgggaaacggagctagtgggtaacttggtggtattgttggaggggatagtgataggtgaag |
100 |
Q |
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|||||||| ||||| | |||||| ||| | || |||||||||||||||||||| |||| ||||||| || |||||||| ||| | || | || |||| |
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| T |
21018491 |
gggaggtggaatttggtgtggcgaagagacctatttgtgtgggaaacggagcttgtggagaacttggggggtttgttggaaggggtgttggtgggggaag |
21018590 |
T |
|
| Q |
101 |
ggagagacgagtgggggtgggagccggagggt----atgtttctcagtgaattctagttacaagaaacttgagaggttgtttttgttggatggtaattta |
196 |
Q |
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| T |
21018591 |
ggagaga-gagtgggggtggaggccggaggagggagagttttctcggtgaactcgtgttataagcttcttgagaggctgtttttgatcgatgttaattta |
21018689 |
T |
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| Q |
197 |
tccaaagacgaggagcttgtgtttggtggccttcggaagagtggggctccgtctaaagggctagcatttgcttggacattgttacttgaccgcattccga |
296 |
Q |
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| T |
21018690 |
tccgaagatgaggagcgtgtgtttggtgatctttggaggtgtcgggtgccgtctaaagtgttagcttttgcttggactttgttacttgaccgtataccga |
21018789 |
T |
|
| Q |
297 |
caagggtgaatctagctattatattcaaggagttttgaacgcggatgcatcgaagagttgtgtgttttgtgggaggatggaggaaacggc |
386 |
Q |
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||||||||||||||| |||| || |||||||| ||||||||||| |||| |||||| |||| ||| ||| ||||||||||||| |
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| T |
21018790 |
taagggtgaatctagcgatta-----ggggtgttttgaatgcggatgcatcaaagacttgtgttttttttggaaggttggaggaaacggc |
21018874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 190 - 318
Target Start/End: Original strand, 16744105 - 16744234
Alignment:
| Q |
190 |
taatttatccaaagacgaggagcttgtgtttggtggccttcggaagagtggggctccgtctaaagggctagcatttgcttggacattgttacttgaccgc |
289 |
Q |
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|||||||||| ||| |||||| |||||||||||| ||| ||||| || | ||||||||||||| | |||| |||||||| || |||||||||||||| |
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| T |
16744105 |
taatttatccggagatgaggagtgtgtgtttggtggtctttggaagtgtcgcgctccgtctaaagtgttagcttttgcttgaacgttgttacttgaccga |
16744204 |
T |
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| Q |
290 |
attccga-caagggtgaatctagctattat |
318 |
Q |
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||||||| |||||||||| ||||||||||| |
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| T |
16744205 |
attccgatcaagggtgaacctagctattat |
16744234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 386
Target Start/End: Original strand, 17192815 - 17192877
Alignment:
| Q |
324 |
aggagttttgaacgcggatgcatcgaagagttgtgtgttttgtgggaggatggaggaaacggc |
386 |
Q |
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| T |
17192815 |
aggagtgttgaatgcggaggcatcgaaaaattgtgtgttgtgtgggagggtggaggaaacggc |
17192877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 381
Target Start/End: Complemental strand, 23293501 - 23293457
Alignment:
| Q |
337 |
gcggatgcatcgaagagttgtgtgttttgtgggaggatggaggaa |
381 |
Q |
| |
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|||||||||||||||| ||||||||| ||||| |||| ||||||| |
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| T |
23293501 |
gcggatgcatcgaagaattgtgtgttgtgtggaaggagggaggaa |
23293457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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