View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9836_low_18 (Length: 429)
Name: NF9836_low_18
Description: NF9836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9836_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 11117318 - 11117728
Alignment:
| Q |
1 |
attaatttctttcgactgcaacactatacatatacaacagtatatgctttgaaatcctaatcactaaagtcataaaagaaaaagtagataaatttagagg |
100 |
Q |
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| T |
11117318 |
attaatttctttcgactgcaacactatacatatacaacagtatatgctttgaaatcctaatcactaaagtcataaaagaaaaagtagataaatttagagg |
11117417 |
T |
|
| Q |
101 |
gtttgaattcagagtactataataattaagtgacgacaattttcactggccagtaacacgcatcgccttaaattcgtatatataataatgcgatttatat |
200 |
Q |
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| T |
11117418 |
gtttgaattcagagtactataataattaagtgacgacaattttcactggccagtaacacacatcaccttaaattggtatatataataatgcgatttatat |
11117517 |
T |
|
| Q |
201 |
attatatttttgaagacttgataaagttttcagatcagaaaaataattactaaatttacaagtgtgtcttaaatattgacgtatattcttcttatcaaat |
300 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||| |||| |
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| T |
11117518 |
attatatttttgaagacttgacaaagttttcagatcagaaaaataattactaaatttacaagtgtatcttaaatattgatgtata---ttcttatgaaat |
11117614 |
T |
|
| Q |
301 |
gtcactcatggcaaccacaagccaccacctatagtcatgttatggcctataaataaaggcacattttcttcctagcaaagcacatcaacttcaaacacat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11117615 |
gtcactcatggcaaccacaagccaccacctatagtcatgttatggcctataaataaaggcacattttcttcctagcaaagcacatcaacttcaaacacat |
11117714 |
T |
|
| Q |
401 |
agctctaaaaatga |
414 |
Q |
| |
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|||||||||||||| |
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| T |
11117715 |
agctctaaaaatga |
11117728 |
T |
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