View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9836_low_19 (Length: 426)
Name: NF9836_low_19
Description: NF9836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9836_low_19 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 418; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Original strand, 34186447 - 34186872
Alignment:
| Q |
1 |
gaagctgaaggatttgaaggcaaaaaattatctctttcaagcaattgatcgagctgtgcttgaaacaattctgaataaggggacgtcgaaggagatttgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34186447 |
gaagctgaaggatttgaaggcaaaaaattatctctttcaagcaattgatcgagctgtgcttgaaacaattctgaataaggggacgtcgaaggagatttgg |
34186546 |
T |
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| Q |
101 |
gattctttaaagaagaaataccaagggactgctagagtgaagagagcacagcttcaggccttaagacgcgattgggaaattttgtcgatgaaaagtggag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34186547 |
gattctttaaagaagaaataccaagggactgctagagtgaagagagcacagcttcaggccttaagacgcgattgggaaattttgtcgatgaaaagtggag |
34186646 |
T |
|
| Q |
201 |
aatctgttaacgactactttgctcgtaccctcacaattgcaaataagatgagaatgtatggtgaacaaatggcggatcttactgttatcgaaaagattct |
300 |
Q |
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| T |
34186647 |
aatctgttaacgactactttgctcgtaccctcacaattgcaaataagatgagaatgtatggtgaacaaatggcggatcttactgttatcgaaaagattct |
34186746 |
T |
|
| Q |
301 |
tcgctcaatgaccgctaggtacgattatgtagtatgttctattgaagaatcacatgaattggattccatggctgtagatgaactacagagtagcttgttg |
400 |
Q |
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| T |
34186747 |
tcgctcaatgaccgctaggtacgattatgtagtatgttctattgaagaatcacatgatttggattccatggctgtagatgaactacagagtagcttgttg |
34186846 |
T |
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| Q |
401 |
gcacacgagcaaagaatgaatggaca |
426 |
Q |
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| T |
34186847 |
gtacacgagcaaagaatgaatggaca |
34186872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 11847703 - 11847771
Alignment:
| Q |
1 |
gaagctgaaggatttgaaggcaaaaaattatctctttcaagcaattgatcgagctgtgcttgaaacaat |
69 |
Q |
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| T |
11847703 |
gaagttgatggacttgaaggccaaaaattacctttttcaagcaatttctcgtgatgtgcttgaaacaat |
11847771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 138; Significance: 5e-72; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 17 - 422
Target Start/End: Original strand, 518345 - 518750
Alignment:
| Q |
17 |
aaggcaaaaaattatctctttcaagcaattgatcgagctgtgcttgaaacaattctgaataaggggacgtcgaaggagatttgggattctttaaagaaga |
116 |
Q |
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|||||||||||| | |||||||||||||||||||||| |||||||||||||||| | || || | ||| ||||||||||| || ||| || || ||| |
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| T |
518345 |
aaggcaaaaaatcacctctttcaagcaattgatcgagttgtgcttgaaacaattttaaaaaacgagacatcgaaggagatcagg--ttccttgaaaaagt |
518442 |
T |
|
| Q |
117 |
aataccaagggactgctagagtgaagagagcacagcttcaggccttaagacgcgattgggaaattttgtcgatgaaaagtggagaatctgttaacgacta |
216 |
Q |
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||||||||| |||||||||| |||| ||||||||||||||||| | |||| || ||| | ||||| |||||| | ||||||||| ||| |||||| |
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| T |
518443 |
aataccaagtcactgctagagggaagcgagcacagcttcaggccctgtgacgtgactggtagattttacagatgaagaatggagaatcaattatcgacta |
518542 |
T |
|
| Q |
217 |
ctttgctcgtaccctcacaattgcaaataagatgagaatgtatggtgaacaaatggcggatcttactgttatcgaaaagattct--tcgctcaatgaccg |
314 |
Q |
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|||||||| || ||||||||| ||| ||||| |||||| |||||||||||||| || ||||||||||||||||||||||||| ||||||||| ||| |
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| T |
518543 |
ttttgctcgaactgtcacaattgtaaacaagataagaatgcatggtgaacaaatgtcgaatcttactgttatcgaaaagattcttctcgctcaataacct |
518642 |
T |
|
| Q |
315 |
ctaggtacgattatgtagtatgttctattgaagaatcacatgaattggattccatggctgtagatgaactacagagtagcttgttggcacacgagcaaag |
414 |
Q |
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| T |
518643 |
ccaggtacgattatgtagtatgttctattgaataatctcatgatctagattccatgaatgcagatgaactccgaagtagctcgttggtacacgaacaacg |
518742 |
T |
|
| Q |
415 |
aatgaatg |
422 |
Q |
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|||||||| |
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| T |
518743 |
aatgaatg |
518750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 17 - 422
Target Start/End: Complemental strand, 367316 - 366912
Alignment:
| Q |
17 |
aaggcaaaaaattatctctttcaagcaattgatcgagctgtgcttgaaacaattctgaataaggggacgtcgaaggagatttgggattctttaaagaaga |
116 |
Q |
| |
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|||||||||| | | |||||||||||||||||||||| ||||||||||| |||| | || || | ||| ||||||||||| || ||| || || ||| |
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| T |
367316 |
aaggcaaaaagtcacctctttcaagcaattgatcgagttgtgcttgaaataattttaaaaaacgagacatcgaaggagatcagg--ttccttgaaaaagt |
367219 |
T |
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| Q |
117 |
aataccaagggactgctagagtgaagagagcacagcttcaggccttaagacgcgattgggaaattttgtcgatgaaaagtggagaatctgttaacgacta |
216 |
Q |
| |
|
||||||||| |||||||||| |||| |||| || ||||||||| | |||| || ||| | ||||| |||||| | ||||||||| |||| ||||| |
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| T |
367218 |
aataccaagtcactgctagagggaagcgagctcaacttcaggccctgtgacgtgactggtagattttacagatgaagaatggagaatcaattaatgacta |
367119 |
T |
|
| Q |
217 |
ctttgctcgtaccctcacaattgcaaataagatga-gaatgtatggtgaacaaatggcggatcttactgttatcgaaaagattcttcgctcaatgaccgc |
315 |
Q |
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|||||||| || |||||||||| ||| ||||| | |||||||| |||| |||||| || ||||||| ||| |||||||||||||||||||||| ||| | |
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| T |
367118 |
ttttgctcgaactctcacaattgtaaacaagattaagaatgtatagtgaccaaatgtcgaatcttaccgttgtcgaaaagattcttcgctcaataacctc |
367019 |
T |
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| Q |
316 |
taggtacgattatgtagtatgttctattgaagaatcacatgaattggattccatggctgtagatgaactacagagtagcttgttggcacacgagcaaaga |
415 |
Q |
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| ||||||||||||||| |||||||||||| |||| ||||| || ||||||||| || ||||||||| | ||||||| ||||| |||||| ||| || |
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| T |
367018 |
catgtacgattatgtagtgtgttctattgaataatctcatgatttagattccatgaatgcagatgaactccgaagtagctcgttggtacacgaacaacga |
366919 |
T |
|
| Q |
416 |
atgaatg |
422 |
Q |
| |
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||||||| |
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| T |
366918 |
atgaatg |
366912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 14864450 - 14864521
Alignment:
| Q |
1 |
gaagctgaaggatttgaaggcaaaaaattatctctttcaagcaattgatcgagctgtgcttgaaacaattct |
72 |
Q |
| |
|
||||||||||||| | |||||||| |||||| | | ||||||||||||||||| ||| || ||||| ||||| |
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| T |
14864450 |
gaagctgaaggatctaaaggcaaagaattatttgtatcaagcaattgatcgagttgttctcgaaaccattct |
14864521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 26545341 - 26545396
Alignment:
| Q |
17 |
aaggcaaaaaattatctctttcaagcaattgatcgagctgtgcttgaaacaattct |
72 |
Q |
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|||||||||||||| ||||||||||||||| ||| | |||||||||||||||||| |
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| T |
26545341 |
aaggcaaaaaattacctctttcaagcaatttctcgtgatgtgcttgaaacaattct |
26545396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 15592569 - 15592637
Alignment:
| Q |
1 |
gaagctgaaggatttgaaggcaaaaaattatctctttcaagcaattgatcgagctgtgcttgaaacaat |
69 |
Q |
| |
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|||| ||| ||| |||||||| |||||||| || |||||||||||| ||| | ||||||||||||||| |
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| T |
15592569 |
gaagttgatggacttgaaggccaaaaattacctttttcaagcaatttctcgtgatgtgcttgaaacaat |
15592637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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