View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9836_low_2 (Length: 643)
Name: NF9836_low_2
Description: NF9836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9836_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 147; Significance: 3e-77; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 318 - 503
Target Start/End: Original strand, 15145898 - 15146084
Alignment:
| Q |
318 |
catatgattaattgagtatggggctcacacgaagttctactcaatgagtaatgacctcaaacttattgcctgtgctctttaagtcaagtatgatatttag |
417 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||| |
|
|
| T |
15145898 |
catatgattaatggagtatggggctcacacgaagttctattcaatgagtaatgacctcaaacttattgcatgtactctttaagtcaagtatggtatttag |
15145997 |
T |
|
| Q |
418 |
aatatgatcatggggcattgaatattacctcctttttcgag-gtgtattgtatgaacttttaaaaataatcgtaagagttttatttt |
503 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
15145998 |
aatatgatcatgtgacattgaatattacctcctttttcgagtgtgtattgtttgaacttttaaaaataatcgtaagagttttatttt |
15146084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 105 - 243
Target Start/End: Original strand, 15145696 - 15145838
Alignment:
| Q |
105 |
ttttgtggtttgaaattgtatctttcacgtgccaaaaattaggttgttacaaaatacaaatgatatgagctttgtataactgat----ttaattatatgg |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
15145696 |
ttttgtggtttaaaattgtatctttcacgtgccaaaaattaggttgttacaaaatacaaatgatatgagctttgtataactgatttaattaattatatgg |
15145795 |
T |
|
| Q |
201 |
atgaaaaatatttaatatgtcgacgagtatatgataatgttag |
243 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
15145796 |
atgaaaaatatttaatatgttgacgagtatatgataatgttag |
15145838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 552 - 589
Target Start/End: Original strand, 15146573 - 15146610
Alignment:
| Q |
552 |
aattagaactattaaaaccaacgttattacattggaaa |
589 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
15146573 |
aattagaactattaaaaccaacattattacatgggaaa |
15146610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University