View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9836_low_20 (Length: 424)

Name: NF9836_low_20
Description: NF9836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9836_low_20
NF9836_low_20
[»] chr4 (6 HSPs)
chr4 (21-362)||(37211268-37211621)
chr4 (137-297)||(36102853-36103013)
chr4 (215-305)||(14032633-14032723)
chr4 (123-243)||(6831204-6831324)
chr4 (127-205)||(4459617-4459695)
chr4 (127-205)||(4458879-4458957)
[»] chr2 (5 HSPs)
chr2 (127-286)||(5275937-5276096)
chr2 (215-305)||(18581792-18581882)
chr2 (215-305)||(38697929-38698019)
chr2 (127-198)||(18581719-18581790)
chr2 (127-198)||(38698021-38698092)
[»] scaffold0103 (1 HSPs)
scaffold0103 (151-305)||(1178-1328)
[»] chr6 (4 HSPs)
chr6 (151-305)||(2638681-2638831)
chr6 (148-285)||(12242230-12242367)
chr6 (206-329)||(12623781-12623909)
chr6 (129-205)||(31278622-31278698)
[»] chr7 (6 HSPs)
chr7 (215-305)||(15679140-15679230)
chr7 (149-266)||(6532888-6533005)
chr7 (214-305)||(12380400-12380491)
chr7 (127-202)||(24912650-24912724)
chr7 (123-198)||(15679063-15679138)
chr7 (151-200)||(12380490-12380539)
[»] chr3 (7 HSPs)
chr3 (215-305)||(30378041-30378131)
chr3 (215-305)||(1419036-1419126)
chr3 (127-204)||(31516648-31516725)
chr3 (136-285)||(2602366-2602515)
chr3 (127-205)||(15488623-15488701)
chr3 (127-198)||(1418963-1419034)
chr3 (127-198)||(30378133-30378204)
[»] chr1 (6 HSPs)
chr1 (215-305)||(9957752-9957842)
chr1 (215-297)||(32178000-32178082)
chr1 (180-305)||(42050375-42050500)
chr1 (166-238)||(8360485-8360557)
chr1 (127-198)||(9957844-9957915)
chr1 (129-162)||(37314153-37314186)
[»] scaffold0552 (1 HSPs)
scaffold0552 (123-243)||(10706-10826)
[»] chr5 (2 HSPs)
chr5 (229-305)||(41870538-41870614)
chr5 (131-185)||(31534843-31534897)


Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 21 - 362
Target Start/End: Complemental strand, 37211621 - 37211268
Alignment:
Q  21 gattactagtacttaccaataatttggaaaataacattatgaataattagtgtatgagaaatgcttgaaatatttgttataaggaaagttaagattcat- 119  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||     
T  37211621 gattactagtacttaccaataatttggaaaatatcattatgaataattagtgtatgagaaatgcttgaaatatttgttatagggaaagttaagattcatt 37211522  T
Q  120 --------agacccctttcaactagaatatcatttaatttgttatcaagattttcccaatttcatggatcataagtatcagaatgagaaatttcttttta 211  Q
            ||| |||||||||||| |||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||     
T  37211521 tctctgatagatccctttcaactaaaatatcatttgatttgttatcaagattctcccaatttcacggatcataagtatcagaatgagaaatttctttttc 37211422  T
Q  212 ataatcatcaccatgtttttcaatattggatgcatttgccacatcattaggaacacttgaattataatcaatttctccattttcattctcatgaattttc 311  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  37211421 ataatcatcaccatatttttcaatattggatgcatttgccacatcattaagaacacttgaattataatcaatttctccattttcattttcatgaattttc 37211322  T
Q  312 caagt---ttttgtatggctcgcttagtaaaaatgtaacaaagcacttgatggg 362  Q
    |||||   ||||||||| ||||||||||||||||||||||||||||||||||||    
T  37211321 caagttttttttgtatgtctcgcttagtaaaaatgtaacaaagcacttgatggg 37211268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 137 - 297
Target Start/End: Complemental strand, 36103013 - 36102853
Alignment:
Q  137 aatatcatttaatttgttatcaagattttcccaatttcatggatcataagtatcagaatgagaaatttctttttaataatcatcaccatgtttttcaata 236  Q
    ||||| |||| | ||||||| |||||| || ||||||| || ||||||| ||||| ||||||||||||  |||| |||||||||||||   |||||||||    
T  36103013 aatataatttgagttgttattaagattctctcaatttcttgaatcataaatatcaaaatgagaaattttgttttcataatcatcaccaaaattttcaata 36102914  T
Q  237 ttggatgcatttgccacatcattaggaacacttgaattataatcaatttctccattttcat 297  Q
    || ||| |||||| |||||||||| ||| |||| |||||| | |||||||  |||||||||    
T  36102913 ttagatacatttggcacatcattaagaatactttaattatgaccaatttcctcattttcat 36102853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 215 - 305
Target Start/End: Original strand, 14032633 - 14032723
Alignment:
Q  215 atcatcaccatgtttttcaatattggatgcatttgccacatcattaggaacacttgaattataatcaatttctccattttcattctcatga 305  Q
    ||||||||||   |||||||||||  ||||||||| |||||||||||||||| ||||||||| |||||||||  |||||||||| ||||||    
T  14032633 atcatcaccaaaattttcaatattatatgcatttggcacatcattaggaacatttgaattatcatcaatttcctcattttcattttcatga 14032723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 123 - 243
Target Start/End: Original strand, 6831204 - 6831324
Alignment:
Q  123 cccctttcaactagaatatcatttaatttgttatcaagattttcccaatttcatggatcataagtatcagaatgagaaatttctttttaataatcatcac 222  Q
    ||||||||||||| |||||| ||| ||||||| |||||||| |||||||| | ||||| |||| ||||| |||||| ||||| || || ||||||||||     
T  6831204 cccctttcaactataatatccttttatttgttttcaagattctcccaattccttggattataaatatcaaaatgaggaattttttgttcataatcatcat 6831303  T
Q  223 catgtttttcaatattggatg 243  Q
     | | ||||||||||| ||||    
T  6831304 taagattttcaatattagatg 6831324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 127 - 205
Target Start/End: Original strand, 4459617 - 4459695
Alignment:
Q  127 tttcaactagaatatcatttaatttgttatcaagattttcccaatttcatggatcataagtatcagaatgagaaatttc 205  Q
    ||||||||||||||||  || || |||| |||||||| ||||||||||||||||||||  ||||| |||||| ||||||    
T  4459617 tttcaactagaatatcccttgatatgttctcaagattctcccaatttcatggatcatatatatcaaaatgagcaatttc 4459695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 127 - 205
Target Start/End: Complemental strand, 4458957 - 4458879
Alignment:
Q  127 tttcaactagaatatcatttaatttgttatcaagattttcccaatttcatggatcataagtatcagaatgagaaatttc 205  Q
    |||||||||||||||| ||| |  ||||||| ||||| ||||||||||||| ||||||| ||||| | |||| ||||||    
T  4458957 tttcaactagaatatcctttgacgtgttatcgagattctcccaatttcatgaatcataaatatcaaattgagcaatttc 4458879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 127 - 286
Target Start/End: Complemental strand, 5276096 - 5275937
Alignment:
Q  127 tttcaactagaatatcatttaatttgttatcaagattttcccaatttcatggatcataagtatcagaatgagaaatttctttt-taataatcatcaccat 225  Q
    |||||||||||||||| ||||| |||||||||||||| |||||||||  |||||| ||| ||||| ||||||| |||| |||| | ||||  ||||||||    
T  5276096 tttcaactagaatatcctttaaattgttatcaagattctcccaatttt-tggatcttaaatatcaaaatgagagattttttttgttataacaatcaccat 5275998  T
Q  226 gtttttcaatattggatgcatttgccacatcattaggaacacttgaattataatcaatttc 286  Q
    | |||| |||||| |||||||||| |||||||||||||||||||||||||| |||||||||    
T  5275997 gattttgaatattagatgcatttggcacatcattaggaacacttgaattatcatcaatttc 5275937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 215 - 305
Target Start/End: Original strand, 18581792 - 18581882
Alignment:
Q  215 atcatcaccatgtttttcaatattggatgcatttgccacatcattaggaacacttgaattataatcaatttctccattttcattctcatga 305  Q
    ||||||||||   |||||||||||  ||||||||| |||||||||||||||| ||||||||| |||||||||  |||||||||| ||||||    
T  18581792 atcatcaccaaaattttcaatattatatgcatttggcacatcattaggaacatttgaattatcatcaatttcctcattttcattttcatga 18581882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 215 - 305
Target Start/End: Complemental strand, 38698019 - 38697929
Alignment:
Q  215 atcatcaccatgtttttcaatattggatgcatttgccacatcattaggaacacttgaattataatcaatttctccattttcattctcatga 305  Q
    ||||||||||   |||||||||||  ||||||||| |||||||||||||||| ||||||||| |||||||||  |||||||||| ||||||    
T  38698019 atcatcaccaaaattttcaatattatatgcatttggcacatcattaggaacatttgaattatcatcaatttcctcattttcattttcatga 38697929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 18581719 - 18581790
Alignment:
Q  127 tttcaactagaatatcatttaatttgttatcaagattttcccaatttcatggatcataagtatcagaatgag 198  Q
    ||||||||||||||||  || |  ||||||||||||| |||||||||  |||||||||| ||||| ||||||    
T  18581719 tttcaactagaatatcccttgaggtgttatcaagattctcccaatttgttggatcataaatatcaaaatgag 18581790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 38698092 - 38698021
Alignment:
Q  127 tttcaactagaatatcatttaatttgttatcaagattttcccaatttcatggatcataagtatcagaatgag 198  Q
    ||||||||||||||||  || |  ||||||||||||| |||||||||  |||||||||| ||||| ||||||    
T  38698092 tttcaactagaatatcccttgaggtgttatcaagattctcccaatttgttggatcataaatatcaaaatgag 38698021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 151 - 305
Target Start/End: Complemental strand, 1328 - 1178
Alignment:
Q  151 tgttatcaagattttcccaatttcatggatcataagtatcagaatgagaaatttctttttaataatcatcaccatgtttttcaatattggatgcatttgc 250  Q
    ||||||||| |||||| ||||||| || ||||||| ||||| |||||| |||||||| || |||||||||||||   |||| |||||| |    |||||     
T  1328 tgttatcaa-attttctcaatttcttgtatcataaatatcaaaatgaggaatttcttgttcataatcatcaccaatatttttaatattagt---atttgg 1233  T
Q  251 cacatcattaggaacacttgaattataatcaatttctccattttcattctcatga 305  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||| ||||||    
T  1232 cacatcattaggaacacttgaattatcatcaatttcttcattttcattttcatga 1178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 5e-26; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 151 - 305
Target Start/End: Original strand, 2638681 - 2638831
Alignment:
Q  151 tgttatcaagattttcccaatttcatggatcataagtatcagaatgagaaatttctttttaataatcatcaccatgtttttcaatattggatgcatttgc 250  Q
    ||||||||| |||||| ||||||| || ||||||| ||||| |||||| |||||||| || |||||||||||||   |||| |||||| |    |||||     
T  2638681 tgttatcaa-attttctcaatttcttgtatcataaatatcaaaatgaggaatttcttgttcataatcatcaccaatatttttaatattagt---atttgg 2638776  T
Q  251 cacatcattaggaacacttgaattataatcaatttctccattttcattctcatga 305  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||| ||||||    
T  2638777 cacatcattaggaacacttgaattatcatcaatttcttcattttcattttcatga 2638831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 148 - 285
Target Start/End: Original strand, 12242230 - 12242367
Alignment:
Q  148 atttgttatcaagattttcccaatttcatggatcataagtatcagaatgagaaatttctttttaataatcatcaccatgtttttcaatattggatgcatt 247  Q
    |||||||||||||||| |||||  ||| | |||||| | ||||| |||||  ||||| |||||   ||||||||||| | |||| ||||||  |||||||    
T  12242230 atttgttatcaagattctcccatattctttgatcatgaatatcaaaatgatgaatttttttttcgcaatcatcaccaagatttttaatattatatgcatt 12242329  T
Q  248 tgccacatcattaggaacacttgaattataatcaattt 285  Q
    || || ||| ||||||||||||||||||| ||||||||    
T  12242330 tgacatatctttaggaacacttgaattatcatcaattt 12242367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 206 - 329
Target Start/End: Complemental strand, 12623909 - 12623781
Alignment:
Q  206 tttttaataatcatcaccatgtttttcaatattggatgcatttgccacatcattaggaacacttgaattataatcaatttctccattttcattctcat-- 303  Q
    ||||| ||||||||||||| | |||| |||||| ||||| || |  |||||||||| |||| ||||||||| |||||||||  |||||||||| ||||      
T  12623909 tttttcataatcatcaccaagatttttaatattagatgctttcggaacatcattagaaacatttgaattatcatcaatttcctcattttcattttcatga 12623810  T
Q  304 ---gaattttccaagtttttgtatggctc 329  Q
       |||||||||||||||||||| |||||    
T  12623809 tccgaattttccaagtttttgtacggctc 12623781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 205
Target Start/End: Complemental strand, 31278698 - 31278622
Alignment:
Q  129 tcaactagaatatcatttaatttgttatcaagattttcccaatttcatggatcataagtatcagaatgagaaatttc 205  Q
    ||||||||| || | ||| |||||||||||||||| ||| |||||| || ||||||| ||| | |||||| ||||||    
T  31278698 tcaactagattaccctttgatttgttatcaagattctccaaatttcttgaatcataaatattaaaatgagcaatttc 31278622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 215 - 305
Target Start/End: Original strand, 15679140 - 15679230
Alignment:
Q  215 atcatcaccatgtttttcaatattggatgcatttgccacatcattaggaacacttgaattataatcaatttctccattttcattctcatga 305  Q
    ||||||||||   |||||||||||  ||||||||| |||||||||||||||| ||||||||| |||||||||  |||||||||| ||||||    
T  15679140 atcatcaccaaaattttcaatattatatgcatttggcacatcattaggaacatttgaattatcatcaatttcctcattttcattttcatga 15679230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 149 - 266
Target Start/End: Complemental strand, 6533005 - 6532888
Alignment:
Q  149 tttgttatcaagattttcccaatttcatggatcataagtatcagaatgagaaatttctttttaataatcatcaccatgtttttcaatattggatgcattt 248  Q
    ||||||||||||||| | |  ||||| ||||| |||| ||||| |||||| || ||||| || ||||||||||||| | ||||||||||| |||||||||    
T  6533005 tttgttatcaagattctacatatttcttggataataaatatcaaaatgaggaacttcttgttcataatcatcaccaagattttcaatattagatgcattt 6532906  T
Q  249 gccacatcattaggaaca 266  Q
    | ||||| |||| |||||    
T  6532905 gacacattattaagaaca 6532888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 214 - 305
Target Start/End: Complemental strand, 12380491 - 12380400
Alignment:
Q  214 aatcatcaccatgtttttcaatattggatgcatttgccacatcattaggaacacttgaattataatcaatttctccattttcattctcatga 305  Q
    |||||||||||   |||||||||||  ||||||||| ||||| ||||| |||| ||||||||| |||||||||  |||||||||| ||||||    
T  12380491 aatcatcaccaaaattttcaatattatatgcatttggcacataattagaaacatttgaattatcatcaatttcctcattttcattttcatga 12380400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 24912724 - 24912650
Alignment:
Q  127 tttcaactagaatatcatttaatttgttatcaagattttcccaatttcatggatcataagtatcagaatgagaaat 202  Q
    |||||||||||||||||||| |||||||||||||||| ||||||| || ||| | |||| ||||| ||||||||||    
T  24912724 tttcaactagaatatcatttgatttgttatcaagattctcccaatgtcttgg-taataaatatcaaaatgagaaat 24912650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 198
Target Start/End: Original strand, 15679063 - 15679138
Alignment:
Q  123 cccctttcaactagaatatcatttaatttgttatcaagattttcccaatttcatggatcataagtatcagaatgag 198  Q
    ||||||||||||||||||||  || |  ||||||||||||| | |||||||  |||||||||| ||||| ||||||    
T  15679063 cccctttcaactagaatatcccttgaggtgttatcaagattcttccaatttgttggatcataaatatcaaaatgag 15679138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 12380539 - 12380490
Alignment:
Q  151 tgttatcaagattttcccaatttcatggatcataagtatcagaatgagaa 200  Q
    ||||||||||||| |||||||||  |||||||||| ||||| ||||||||    
T  12380539 tgttatcaagattctcccaatttgttggatcataaatatcaaaatgagaa 12380490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 215 - 305
Target Start/End: Complemental strand, 30378131 - 30378041
Alignment:
Q  215 atcatcaccatgtttttcaatattggatgcatttgccacatcattaggaacacttgaattataatcaatttctccattttcattctcatga 305  Q
    ||||||||||   |||||||||||  ||||||||| |||||||||||||||| ||||||||| |||||||||  |||||||||| ||||||    
T  30378131 atcatcaccaaaattttcaatattatatgcatttggcacatcattaggaacatttgaattatcatcaatttcctcattttcattttcatga 30378041  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 215 - 305
Target Start/End: Original strand, 1419036 - 1419126
Alignment:
Q  215 atcatcaccatgtttttcaatattggatgcatttgccacatcattaggaacacttgaattataatcaatttctccattttcattctcatga 305  Q
    ||||||||||   |||||||||||  ||||||||| |||||||||| ||||| ||||||||| |||||||||  |||||||||| ||||||    
T  1419036 atcatcaccaaaattttcaatattatatgcatttggcacatcattatgaacatttgaattatcatcaatttcctcattttcattttcatga 1419126  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 204
Target Start/End: Original strand, 31516648 - 31516725
Alignment:
Q  127 tttcaactagaatatcatttaatttgttatcaagattttcccaatttcatggatcataagtatcagaatgagaaattt 204  Q
    ||||||||||||||||  || |||||||||||||||| ||| |||||| |||||||||| ||| | |||||| |||||    
T  31516648 tttcaactagaatatctcttgatttgttatcaagattctccgaatttcttggatcataaatattaaaatgagcaattt 31516725  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 285
Target Start/End: Complemental strand, 2602515 - 2602366
Alignment:
Q  136 gaatatcatttaatttgttatcaagattttcccaatt-tcatggatcataagtatcagaatgagaaatttctttttaataatcatcaccatgtttttcaa 234  Q
    ||||||||||| |||| ||||||| ||| ||| |||| || ||||| |||| ||| | ||| || ||||| ||||| | |||||||||||  ||||  ||    
T  2602515 gaatatcatttgatttattatcaatattgtcctaattctcttggattataaatattaaaattaggaatttatttttcaaaatcatcaccaaatttta-aa 2602417  T
Q  235 tattggatgcatttgccacatcattaggaacacttgaattataatcaattt 285  Q
    || |  |||||||||  |||||||||| |||||||||||||| ||||||||    
T  2602416 tagtatatgcatttgaaacatcattagaaacacttgaattatcatcaattt 2602366  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 127 - 205
Target Start/End: Original strand, 15488623 - 15488701
Alignment:
Q  127 tttcaactagaatatcatttaatttgttatcaagattttcccaatttcatggatcataagtatcagaatgagaaatttc 205  Q
    ||||||||| ||||||  || || ||||||||||||| ||||||||||  ||||||||| ||||| |||||| ||||||    
T  15488623 tttcaactaaaatatctcttgatgtgttatcaagattctcccaatttctcggatcataaatatcaaaatgaggaatttc 15488701  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 1418963 - 1419034
Alignment:
Q  127 tttcaactagaatatcatttaatttgttatcaagattttcccaatttcatggatcataagtatcagaatgag 198  Q
    ||||||||||||||||  || |  ||||||||||||| |||||||||  |||||||||| ||||| ||||||    
T  1418963 tttcaactagaatatcccttgaggtgttatcaagattctcccaatttgttggatcataaatatcaaaatgag 1419034  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 30378204 - 30378133
Alignment:
Q  127 tttcaactagaatatcatttaatttgttatcaagattttcccaatttcatggatcataagtatcagaatgag 198  Q
    ||||||||||||||||  || |  ||||||||||||| |||||||||  |||||||||| ||||| ||||||    
T  30378204 tttcaactagaatatcccttgaggtgttatcaagattctcccaatttgttggatcataaatatcaaaatgag 30378133  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 215 - 305
Target Start/End: Complemental strand, 9957842 - 9957752
Alignment:
Q  215 atcatcaccatgtttttcaatattggatgcatttgccacatcattaggaacacttgaattataatcaatttctccattttcattctcatga 305  Q
    ||||||||||   |||||||||||  ||||||||| |||||||||||||||| ||||||||| |||||||||  |||||||||| ||||||    
T  9957842 atcatcaccaaaattttcaatattatatgcatttggcacatcattaggaacatttgaattatcatcaatttcctcattttcattttcatga 9957752  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 215 - 297
Target Start/End: Original strand, 32178000 - 32178082
Alignment:
Q  215 atcatcaccatgtttttcaatattggatgcatttgccacatcattaggaacacttgaattataatcaatttctccattttcat 297  Q
    ||||||||||   |||||||||||  ||||||||| ||||| |||||||||| ||||||||| |||||||||  |||||||||    
T  32178000 atcatcaccaaaattttcaatattatatgcatttggcacattattaggaacatttgaattatcatcaatttcctcattttcat 32178082  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 180 - 305
Target Start/End: Original strand, 42050375 - 42050500
Alignment:
Q  180 tcataagtatcagaatgagaaatttctttttaataatcatcaccatgtttttcaatattggatgcatttgccacatcattaggaacacttgaattataat 279  Q
    |||||||||||| |||||  |||||||| || |||||||||||||   ||||||||| |  ||||||||| |||||||||| ||| |||||||| || |     
T  42050375 tcataagtatcaaaatgaagaatttcttgttcataatcatcaccaaaattttcaatactatatgcatttggcacatcatta-gaatacttgaatgatcaa 42050473  T
Q  280 caatttctccattt-tcattctcatga 305  Q
    |||||||| ||||| ||||| ||||||    
T  42050474 caatttcttcatttatcattttcatga 42050500  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 238
Target Start/End: Complemental strand, 8360557 - 8360485
Alignment:
Q  166 cccaatttcatggatcataagtatcagaatgagaaatttctttttaataatcatcaccatgtttttcaatatt 238  Q
    ||||||||| || ||||||| ||||| |||||||||||| |||||  |||||||||||| | |||||| ||||    
T  8360557 cccaatttcttgtatcataaatatcacaatgagaaatttatttttcttaatcatcaccaagattttcactatt 8360485  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 9957915 - 9957844
Alignment:
Q  127 tttcaactagaatatcatttaatttgttatcaagattttcccaatttcatggatcataagtatcagaatgag 198  Q
    ||||||||||||||||  || |  ||||||||||||| |||||||||  |||||||||| ||||| ||||||    
T  9957915 tttcaactagaatatcccttgaggtgttatcaagattctcccaatttgttggatcataaatatcaaaatgag 9957844  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 162
Target Start/End: Complemental strand, 37314186 - 37314153
Alignment:
Q  129 tcaactagaatatcatttaatttgttatcaagat 162  Q
    |||||||||||||||||| |||||||||||||||    
T  37314186 tcaactagaatatcatttgatttgttatcaagat 37314153  T

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Target: scaffold0552 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0552
Description:

Target: scaffold0552; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 123 - 243
Target Start/End: Original strand, 10706 - 10826
Alignment:
Q  123 cccctttcaactagaatatcatttaatttgttatcaagattttcccaatttcatggatcataagtatcagaatgagaaatttctttttaataatcatcac 222  Q
    ||||||||||||| |||||| ||| ||||||| |||||||| |||||||| | ||||| |||| ||||| |||||| ||||| || || ||||||||||     
T  10706 cccctttcaactataatatccttttatttgttttcaagattctcccaattccttggattataaatatcaaaatgaggaattttttgttcataatcatcat 10805  T
Q  223 catgtttttcaatattggatg 243  Q
     | | ||||||||||| ||||    
T  10806 taagattttcaatattagatg 10826  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 41870614 - 41870538
Alignment:
Q  229 tttcaatattggatgcatttgccacatcattaggaacacttgaattataatcaatttctccattttcattctcatga 305  Q
    ||||||||||  ||||||||| |||||||||||||||| ||||||||| |||||||||  |||||||||| ||||||    
T  41870614 tttcaatattatatgcatttggcacatcattaggaacatttgaattatcatcaatttcctcattttcattttcatga 41870538  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 185
Target Start/End: Original strand, 31534843 - 31534897
Alignment:
Q  131 aactagaatatcatttaatttgttatcaagattttcccaatttcatggatcataa 185  Q
    |||||||||||| ||| ||||| ||||||||||| ||||| ||| ||||||||||    
T  31534843 aactagaatatcctttgatttgatatcaagatttgcccaaattcttggatcataa 31534897  T

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