View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9836_low_21 (Length: 421)
Name: NF9836_low_21
Description: NF9836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9836_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 17 - 420
Target Start/End: Original strand, 36935836 - 36936246
Alignment:
| Q |
17 |
atcagtattaatttatggataatgccagttttagacatgatgtataataatgttatttactagtttgtttaatttctgcgtttctcgatgcataaccatt |
116 |
Q |
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| T |
36935836 |
atcaatattaatttatggataatgccagttttagacatgatgtataataatgttatttactagtttgtttaatttctgcgtttctcgatgcataaccatt |
36935935 |
T |
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| Q |
117 |
ttatgatgttttttgggcacaaatataccacatcccttcctatgtataaatcatggcgaagttattcataaatatagacaactcctattcatggtgttta |
216 |
Q |
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| T |
36935936 |
ttatgatgttttttgggcacaaatataccacatcccttcctatgtataaatcatggcgaagttattcataaatatagactactcctattcatggtgttta |
36936035 |
T |
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| Q |
217 |
a--------tcttgctcggttatgaattattttctttggtttttgtatgctcagattgactacaggaagtctcgaaagtgaccattagatggttgtagaa |
308 |
Q |
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| T |
36936036 |
atcttgcattcttgctcggttatgaatta-tttctttggtttttgtatgctcagattgactacaggtagtctcgaaagtgaccattagatggttttagaa |
36936134 |
T |
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| Q |
309 |
gagatcgaggctggagacatctcacattagcaatgtcctcaggatgcaattccaaaaggtcaaacacatttagggtttttcgacaaattgaatgcaataa |
408 |
Q |
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| T |
36936135 |
gagatcgaggttggagacatctcacattagcaatgtcctcaggatgcaattccaaaaggtcaaacatatttagggtttttcgacaaattgaacacaataa |
36936234 |
T |
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| Q |
409 |
caccaaactcga |
420 |
Q |
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| T |
36936235 |
caacaaactcga |
36936246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 372
Target Start/End: Original strand, 36956993 - 36957044
Alignment:
| Q |
320 |
tggagacatctcacattagcaatgtcctcaggatgcaattccaaaaggtcaaa |
372 |
Q |
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| T |
36956993 |
tggagacatctcgcattagcaatatcctcagg-tgcaatttcagaaggtcaaa |
36957044 |
T |
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