View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9836_low_23 (Length: 417)
Name: NF9836_low_23
Description: NF9836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9836_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 138; Significance: 5e-72; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 12 - 157
Target Start/End: Complemental strand, 929891 - 929746
Alignment:
| Q |
12 |
caaaggtgggaagaaaggtaggaaattctcacatttatcgtgtatggatggatacaatctaatgcattttgctaggtagaaatcaaattatctttgaagg |
111 |
Q |
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| T |
929891 |
caaaggtggtaagaaaggtaggaaattctcacatttatcgtgtatggatggatacaatctaatgcatttttctaggtagaaatcaaattatctttgaagg |
929792 |
T |
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| Q |
112 |
aaactcaatgaatgtaagcggcatagtgtcgcatattaaaatggtt |
157 |
Q |
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| T |
929791 |
aaactcaatgaatgtaagcggcatagtgtcgcatattaaaatggtt |
929746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 321 - 400
Target Start/End: Complemental strand, 929340 - 929261
Alignment:
| Q |
321 |
tcttattcggactttctttaatgtttcagaagaccgtctaagttcggctgttgtgcccgaatgtttggcttctctctatg |
400 |
Q |
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| T |
929340 |
tcttactcggactttctttaatgtttcagaagaccgtctaagttcggctgttgtgcccgaatgtttggcttctctctatg |
929261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 247 - 326
Target Start/End: Complemental strand, 929441 - 929362
Alignment:
| Q |
247 |
tcatgatacatttttcatatcatacaaaaacttcacaaggtccttattgtgacttatttcatcgtcttactgtttcttat |
326 |
Q |
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| T |
929441 |
tcatgatacatttttcatatcatacaaaaacttcacaaggtcctaattgtgacttatttcatcgtcttactgttttttat |
929362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 252 - 348
Target Start/End: Original strand, 1201514 - 1201614
Alignment:
| Q |
252 |
atacatttttcatatcatacaaaaacttcacaaggtccttattgtgacttatttcatcgtcttactgtt----tcttattcggactttctttaatgtttc |
347 |
Q |
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| T |
1201514 |
atacatttttcatatcatacaaaaacttcacgaggtcctgattgtgagttattgcattgtcttactgttttaatcttattcagattatctttaatgtttc |
1201613 |
T |
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| Q |
348 |
a |
348 |
Q |
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| T |
1201614 |
a |
1201614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 349 - 396
Target Start/End: Original strand, 1201640 - 1201687
Alignment:
| Q |
349 |
gaagaccgtctaagttcggctgttgtgcccgaatgtttggcttctctc |
396 |
Q |
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| T |
1201640 |
gaagagcgtctaagttctgctgttgtgcccgaatgtttggcttctctc |
1201687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 204
Target Start/End: Complemental strand, 929676 - 929642
Alignment:
| Q |
170 |
ggatggaatcgaggactaaaccgttaaacggttat |
204 |
Q |
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| T |
929676 |
ggatggaatcgaggactaaaccgttaaactgttat |
929642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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