View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9836_low_24 (Length: 403)
Name: NF9836_low_24
Description: NF9836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9836_low_24 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 4135371 - 4134969
Alignment:
| Q |
1 |
attagcttctagaaccttctgacaaaacacttccgcttccgtcggatacgtgccatccacctcaagatcagtgttcaacatcggcaacccagatatctcg |
100 |
Q |
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| T |
4135371 |
attagcttctagaaccttctgacaaaacacttccgcttccgtcggatacgtgccatccacctcatgatcagtgttcaacatcggcaacccagatatctcg |
4135272 |
T |
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| Q |
101 |
atgtgctccacgtggactccctcaattcgctcctttgttagctctattgagtattgctgcatcccaccacacaatagcaaaaatatttagattcatttat |
200 |
Q |
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| T |
4135271 |
atgtgctccacgtggactccctcaattcgctcctttgttagctctattgagtattgctgcatcccaccacacaatagcaaaaatatttagattcatttat |
4135172 |
T |
|
| Q |
201 |
ggcaatatataataaccatgaaaaaatgattgaacatttatagtctataattgagttttagttaagacaaatcgtttagaagtatactgagttcgaactt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4135171 |
ggcaatatataataaccatgaaaaaatgattgaacatttatagtctataattgagttttagttaagacaaatcgtttagaagtatactgagttcgaactt |
4135072 |
T |
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| Q |
301 |
tagctaaaataatctttgctcagaacattacttattttatggcagaatttcagattcttggaactcttactctaactatcatagggttcaaaaaatggtc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4135071 |
tagctaaaataatctttgctcagaacattacttattttatggcagaatttcagattcttggaactcttactctaactatcatagggttcaaaaaatggtc |
4134972 |
T |
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| Q |
401 |
tat |
403 |
Q |
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| T |
4134971 |
tat |
4134969 |
T |
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