View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9836_low_25 (Length: 401)
Name: NF9836_low_25
Description: NF9836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9836_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 390
Target Start/End: Complemental strand, 39557884 - 39557510
Alignment:
| Q |
18 |
atgaacctttaacattggcttggagatagaattcagtactatcagggcctaaattgacatccttcactggcttgtaaaccacacgtttacttttgaacaa |
117 |
Q |
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| T |
39557884 |
atgaacctttaacattggcttggagatagaattcagtactatcagggcctaaattgacatccttcactggcttgtaaaccacacgtttacttttgaacaa |
39557785 |
T |
|
| Q |
118 |
acccatcagtctaaagaagttgttactctttagaagatggaaagaaaaatggaaatgtcaacaaaaatatttcatactataggaagaagggtaggcggtg |
217 |
Q |
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| T |
39557784 |
acccatcagtctaaagaagttgttactctttagaagatggaaagaaaaatggaaatgtcaacaaaaatatttcatattataggaagaagggtaggcggtg |
39557685 |
T |
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| Q |
218 |
atggcaagaggatcaaaacattaatttaacgtacatatat--atattcttagttttgatattgatgatttggatttggcatgataactactagaaaacat |
315 |
Q |
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| T |
39557684 |
atggcaagaggatcaaaacattaatttaacgtacatatatatatattcttagttttgatattgatgatttggatttggcatgataactactagaaaacat |
39557585 |
T |
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| Q |
316 |
gtcattttcactataacagtgagaaatttgcatgcnnnnnnnnctaaggactgaacattatattcctccacctat |
390 |
Q |
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| T |
39557584 |
gtcattttcactataacagtgagaaatttgcatgcaaaaaaaactaaggactgaacattatattcctccacctat |
39557510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 117
Target Start/End: Complemental strand, 44419137 - 44419040
Alignment:
| Q |
20 |
gaacctttaacattggcttggagatagaattcagtactatcagggcctaaattgacatccttcactggcttgtaaaccacacgtttacttttgaacaa |
117 |
Q |
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|||||||| |||||||||||||| ||||||||||| |||| ||||| ||| | |||||| || | || |||||||||||| |||| ||||||||| |
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| T |
44419137 |
gaacctttgacattggcttggaggtagaattcagtgctataagggcttaagtcgacatcatttgcaggtgtgtaaaccacacacttacgtttgaacaa |
44419040 |
T |
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