View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9836_low_26 (Length: 399)

Name: NF9836_low_26
Description: NF9836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9836_low_26
NF9836_low_26
[»] chr3 (11 HSPs)
chr3 (17-393)||(34370846-34371221)
chr3 (63-154)||(27633995-27634086)
chr3 (63-154)||(34518813-34518904)
chr3 (236-325)||(27627751-27627843)
chr3 (236-325)||(34513540-34513632)
chr3 (248-325)||(27621982-27622058)
chr3 (248-325)||(34508010-34508086)
chr3 (67-150)||(34527918-34527998)
chr3 (236-277)||(34479401-34479442)
chr3 (246-277)||(34464466-34464497)
chr3 (117-154)||(34489955-34489992)
[»] chr2 (4 HSPs)
chr2 (236-385)||(10528180-10528328)
chr2 (236-393)||(10535076-10535232)
chr2 (57-140)||(10534909-10534992)
chr2 (43-140)||(10527992-10528092)
[»] chr6 (5 HSPs)
chr6 (240-393)||(24472177-24472337)
chr6 (17-187)||(24486368-24486544)
chr6 (240-374)||(24467899-24468032)
chr6 (22-171)||(24468116-24468270)
chr6 (67-173)||(24472421-24472529)
[»] scaffold1215 (2 HSPs)
scaffold1215 (236-359)||(2264-2386)
scaffold1215 (57-140)||(2097-2180)
[»] chr1 (2 HSPs)
chr1 (236-277)||(22002058-22002099)
chr1 (236-277)||(22008329-22008370)


Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 17 - 393
Target Start/End: Complemental strand, 34371221 - 34370846
Alignment:
Q  17 cagagagttcaggcttcattcaagccaaattgtcaaaaacagaactttgtggcacctcagttggtgctgttgatgatgaagctctcatgttattttcctc 116  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34371221 cagagagttcaggcttcattgaagccaaattgtcaaaatcagaactttgtggcacctcagttggtgctgttgatgatgaagctctcatgttattttcctc 34371122  T
Q  117 tgtgcagtttgtcattgtcactcactcaacaatcactcacgcaaccttttgtcaaacgacgaggcataagagnnnnnnnnncatttattgggttatatnn 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||         |||||||||||||||||      
T  34371121 tgtgcagtttgtcattgtcactcactcaacaatcactcacgcaaccttttgtcaaacgacgaggcatgagag-ttttttttcatttattgggttatataa 34371023  T
Q  217 nnnnnnctcttgagtgagggtgtgtgtagattgtgataagcacaaatggaaaacaattattaattattctattaaaattctaattttccataaaatgaac 316  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34371022 aaaaaactcttgagtgagggtgtgtgtagattgtgataagcacaaatggaaaacaattattaattattctattaaaattctaattttccataaaatgaac 34370923  T
Q  317 aatgtgattnnnnnnngctaagaaattgggattagtcttgaagccaagaacgcctttgtgaaatagtacagacttca 393  Q
    |||||||||       |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  34370922 aatgtgattaaaaaaagctaagaaattgtgattagtcttgaagccaagaacgcctttgtgaaatagtactgacttca 34370846  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 63 - 154
Target Start/End: Original strand, 27633995 - 27634086
Alignment:
Q  63 ttgtggcacctcagttggtgctgttgatgatgaagctctcatgttattttcctctgtgcagtttgtcattgtcactcactcaacaatcactc 154  Q
    ||||| ||||||||| |||| |||||| ||||||||||  ||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  27633995 ttgtgacacctcagtaggtgttgttgaagatgaagctccaatgttgttttcctctgtgcagttcgtcattgtcactcactcaacaatcactc 27634086  T

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Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 63 - 154
Target Start/End: Original strand, 34518813 - 34518904
Alignment:
Q  63 ttgtggcacctcagttggtgctgttgatgatgaagctctcatgttattttcctctgtgcagtttgtcattgtcactcactcaacaatcactc 154  Q
    ||||| ||||||||| |||| |||||| ||||||||||  ||||| || |||||||||||||| ||||||||||||||||||||||||||||    
T  34518813 ttgtgacacctcagtaggtgttgttgaagatgaagctccaatgttgttgtcctctgtgcagttcgtcattgtcactcactcaacaatcactc 34518904  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 236 - 325
Target Start/End: Original strand, 27627751 - 27627843
Alignment:
Q  236 gtgtgtgtagattgtgataagcacaaatggaaaacaattattaattattctatta---aaattctaattttccataaaatgaacaatgtgatt 325  Q
    ||||||||| ||||||||||||| ||||||||||||||| ||||||||| |||||   |||||| ||||||||||||| |||||| |||||||    
T  27627751 gtgtgtgtaaattgtgataagcaaaaatggaaaacaatttttaattattgtattaattaaattcaaattttccataaactgaacattgtgatt 27627843  T

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Target: chr3; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 236 - 325
Target Start/End: Original strand, 34513540 - 34513632
Alignment:
Q  236 gtgtgtgtagattgtgataagcacaaatggaaaacaattattaattattctatta---aaattctaattttccataaaatgaacaatgtgatt 325  Q
    ||||||||| ||||||||||||| ||||||||||||||| ||||||||| |||||   |||||| ||||||||||||| |||||| |||||||    
T  34513540 gtgtgtgtaaattgtgataagcaaaaatggaaaacaatttttaattattgtattaattaaattcaaattttccataaactgaacattgtgatt 34513632  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 248 - 325
Target Start/End: Original strand, 27621982 - 27622058
Alignment:
Q  248 tgtgataagcacaaatggaaaacaattattaattattctattaaaattctaattttccataaaatgaacaatgtgatt 325  Q
    |||||||| |||||||||||||||||| |||||||  ||||| ||||||| ||||||| ||||||||||| |||||||    
T  27621982 tgtgataatcacaaatggaaaacaatttttaattaccctatt-aaattcttattttccgtaaaatgaacattgtgatt 27622058  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 325
Target Start/End: Original strand, 34508010 - 34508086
Alignment:
Q  248 tgtgataagcacaaatggaaaacaattattaattattctattaaaattctaattttccataaaatgaacaatgtgatt 325  Q
    |||||||| |||||||||||||||||| ||||||   ||||| ||||||| ||||||| ||||||||||| |||||||    
T  34508010 tgtgataatcacaaatggaaaacaatttttaattgccctatt-aaattcttattttccgtaaaatgaacattgtgatt 34508086  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 150
Target Start/End: Original strand, 34527918 - 34527998
Alignment:
Q  67 ggcacctcagttggtgctgttgatgatgaagctctcatgttattttcctctgtgcagtttgtcattgtcactcactcaacaatc 150  Q
    ||||||||||| |||| |||||| ||||||   |||| ||| |||||||||||||| || ||||||||||||||||| ||||||    
T  34527918 ggcacctcagtaggtgttgttgaagatgaa---ctcaagttgttttcctctgtgcaattcgtcattgtcactcactcgacaatc 34527998  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 236 - 277
Target Start/End: Original strand, 34479401 - 34479442
Alignment:
Q  236 gtgtgtgtagattgtgataagcacaaatggaaaacaattatt 277  Q
    |||||| || ||||||||||||||||||||||||||||||||    
T  34479401 gtgtgtataaattgtgataagcacaaatggaaaacaattatt 34479442  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 246 - 277
Target Start/End: Original strand, 34464466 - 34464497
Alignment:
Q  246 attgtgataagcacaaatggaaaacaattatt 277  Q
    ||||||||||||||||||||||||||||||||    
T  34464466 attgtgataagcacaaatggaaaacaattatt 34464497  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 154
Target Start/End: Original strand, 34489955 - 34489992
Alignment:
Q  117 tgtgcagtttgtcattgtcactcactcaacaatcactc 154  Q
    |||||| || ||||||||||||||||||||||||||||    
T  34489955 tgtgcaattcgtcattgtcactcactcaacaatcactc 34489992  T

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Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 236 - 385
Target Start/End: Original strand, 10528180 - 10528328
Alignment:
Q  236 gtgtgtgtagattgtgataagcacaaatggaaaacaattattaattattctattaaaattctaattttccataaaatgaacaatgtgattnnnnnnngct 335  Q
    |||||||||  |||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||| ||||||||||||||       |||    
T  10528180 gtgtgtgtaatttgtgataagcacaaatggaaaacaattattagttattatatt-aaattctaattttccataaactgaacaatgtgattaaaataagct 10528278  T
Q  336 aagaaattgggattagtcttgaagccaagaacgcctttgtgaaatagtac 385  Q
    ||||||||| ||| || ||||||| |||||| |||||| ||||| |||||    
T  10528279 aagaaattgtgatcagccttgaagtcaagaaggcctttttgaaaaagtac 10528328  T

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Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 236 - 393
Target Start/End: Original strand, 10535076 - 10535232
Alignment:
Q  236 gtgtgtgtagattgtgataagcacaaatggaaaacaattattaattattctattaaaattctaattttccataaaatgaacaatgtgattnnnnnnngct 335  Q
    ||||||||| ||||| || |||||||||||||||||||||||| ||||| |||| |||||||||||||||||||| ||||||||||||||       |||    
T  10535076 gtgtgtgtaaattgtcattagcacaaatggaaaacaattattagttattatatt-aaattctaattttccataaactgaacaatgtgattaaaataagct 10535174  T
Q  336 aagaaattgggattagtcttgaagccaagaacgcctttgtgaaatagtacagacttca 393  Q
    ||||||||| ||| || ||||||| |||||| |||||| ||||| ||||| |||||||    
T  10535175 aagaaattgtgatcagccttgaagtcaagaaggcctttttgaaaaagtactgacttca 10535232  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 57 - 140
Target Start/End: Original strand, 10534909 - 10534992
Alignment:
Q  57 agaactttgtggcacctcagttggtgctgttgatgatgaagctctcatgttattttcctctgtgcagtttgtcattgtcactca 140  Q
    ||||| ||||| ||||||||| |||| || ||  |||||||  |||||||| |||||||||||| |||| ||||||||||||||    
T  10534909 agaaccttgtgtcacctcagtaggtgttggtggagatgaagagctcatgttgttttcctctgtgtagttcgtcattgtcactca 10534992  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 140
Target Start/End: Original strand, 10527992 - 10528092
Alignment:
Q  43 aaattgtcaaaaacagaa---ctttgtggcacctcagttggtgctgttgatgatgaagctctcatgttattttcctctgtgcagtttgtcattgtcactc 139  Q
    ||||||||||||||||||   | ||| ||||||||||| |||| || ||  |||||||  | |||||| |||||||||||| |||| |||||||||||||    
T  10527992 aaattgtcaaaaacagaagaaccttggggcacctcagtaggtgttgctggagatgaagtgcgcatgttgttttcctctgtgtagttcgtcattgtcactc 10528091  T
Q  140 a 140  Q
    |    
T  10528092 a 10528092  T

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Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 240 - 393
Target Start/End: Complemental strand, 24472337 - 24472177
Alignment:
Q  240 gtgtagattgtgataagcacaaatggaaaacaattattaattattctat----taaaattctaattttccataaaatgaacaatgtgattnnnnnnngct 335  Q
    ||||| |||||||| |||||||||||||||||||||||| |||||||||    | | |||||||||||||||||| |||||||||| |||       |||    
T  24472337 gtgtaaattgtgatcagcacaaatggaaaacaattattagttattctattctattacattctaattttccataaactgaacaatgtaattaaaatatgct 24472238  T
Q  336 aagaaattgggattagtcttgaagc---caagaacgcctttgtgaaatagtacagacttca 393  Q
    ||||||||| ||| || ||||||||   |||||| |||||||||||||||||  |||||||    
T  24472237 aagaaattgtgatcagccttgaagccaacaagaaggcctttgtgaaatagtattgacttca 24472177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 17 - 187
Target Start/End: Complemental strand, 24486544 - 24486368
Alignment:
Q  17 cagagagttcaggcttcattcaagccaaattgt-caaaaacagaa---ctttgtggcacctcagttggtgctgttgatgatgaagctctcatgttatttt 112  Q
    |||| |||||| |||||||| |||  ||||||| |||||||||||   | |||||||| |||||| |||| |||||| ||  |||| |||| ||| ||||    
T  24486544 cagaaagttcaagcttcattgaagaaaaattgtacaaaaacagaagaaccttgtggcatctcagtaggtgttgttgaagacaaagcgctcacgttgtttt 24486445  T
Q  113 cctctgtgcagtttgtcattgtcactcactcaacaatca--ctcacgcaaccttttgtcaaacgacgaggcataaga 187  Q
    ||||| |||||||  |||||||||||| |||||||||||  ||||| |||||||||||||||| ||||||| |||||    
T  24486444 cctctatgcagttcttcattgtcactcgctcaacaatcactctcacccaaccttttgtcaaacaacgaggcgtaaga 24486368  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 374
Target Start/End: Complemental strand, 24468032 - 24467899
Alignment:
Q  240 gtgtagattgtgataagcacaaatggaaaacaattattaattattctattaaaattctaattttccataaaatgaacaatgtgattnnnnnnngctaaga 339  Q
    ||||| || |||||||||||||||||||||||||||||| ||| ||||||   ||||||||||| |||||| ||| |||  | |||        ||||||    
T  24468032 gtgtaaatcgtgataagcacaaatggaaaacaattattagttagtctatt-gcattctaatttttcataaattgatcaaattaattaaaataaactaaga 24467934  T
Q  340 aattgggattagtcttgaagccaagaacgcctttg 374  Q
    ||||| ||| || |||||||||||||| |||||||    
T  24467933 aattgtgatcagccttgaagccaagaaggcctttg 24467899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 171
Target Start/End: Complemental strand, 24468270 - 24468116
Alignment:
Q  22 agttcaggcttcattcaagccaaattgtcaaaaac---agaactttgtggcacctcagttggtgctgttgatgatgaagctctcatgttattttcctctg 118  Q
    |||||| |||||||| | || ||||||| ||||||   ||||| |||| ||| ||||||  ||| |||| | |||||||| |||  ||| ||||||||||    
T  24468270 agttcaagcttcattgacgcaaaattgtaaaaaacggaagaaccttgttgcatctcagtaagtgttgtttaagatgaagcgctctcgttgttttcctctg 24468171  T
Q  119 tgcagtttgtcattgtcactcactcaacaatca--ctcacgcaaccttttgtcaa 171  Q
    || ||||  ||||| | |||| |||||||||||  ||||| ||||||||||||||    
T  24468170 tgtagttcttcattttaactcgctcaacaatcactctcacacaaccttttgtcaa 24468116  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 173
Target Start/End: Complemental strand, 24472529 - 24472421
Alignment:
Q  67 ggcacctcagttggtgctgttgatgatgaagctctcatgttattttcctctgtgcagtttgtcattgtcactcactcaacaatca--ctcacgcaacctt 164  Q
    |||| |||||| |||| |||||| ||  |||| |||| ||| |||||||||||||| ||  ||||||||| || | |||||||||  ||||| |||||||    
T  24472529 ggcatctcagtaggtgttgttgaagacaaagcgctcacgttgttttcctctgtgcaattcatcattgtcagtcgcacaacaatcactctcacccaacctt 24472430  T
Q  165 ttgtcaaac 173  Q
    |||||||||    
T  24472429 ttgtcaaac 24472421  T

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Target: scaffold1215 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold1215
Description:

Target: scaffold1215; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 236 - 359
Target Start/End: Original strand, 2264 - 2386
Alignment:
Q  236 gtgtgtgtagattgtgataagcacaaatggaaaacaattattaattattctattaaaattctaattttccataaaatgaacaatgtgattnnnnnnngct 335  Q
    ||||||||| ||||| || |||||||||||||||||||||||| ||||| |||| |||||||||||||||||||| |||||||||| |||       |||    
T  2264 gtgtgtgtaaattgtcattagcacaaatggaaaacaattattagttattatatt-aaattctaattttccataaactgaacaatgtaattaaaataagct 2362  T
Q  336 aagaaattgggattagtcttgaag 359  Q
    ||||||||| ||| || |||||||    
T  2363 aagaaattgtgatcagccttgaag 2386  T

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Target: scaffold1215; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 57 - 140
Target Start/End: Original strand, 2097 - 2180
Alignment:
Q  57 agaactttgtggcacctcagttggtgctgttgatgatgaagctctcatgttattttcctctgtgcagtttgtcattgtcactca 140  Q
    ||||| ||||| ||||||||| |||| || ||  |||||||  |||||||| |||||||||||| |||| ||||||||||||||    
T  2097 agaaccttgtgtcacctcagtaggtgttggtggagatgaagagctcatgttgttttcctctgtgtagttcgtcattgtcactca 2180  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 277
Target Start/End: Complemental strand, 22002099 - 22002058
Alignment:
Q  236 gtgtgtgtagattgtgataagcacaaatggaaaacaattatt 277  Q
    ||||||||| ||| ||||||||||||| ||||||||||||||    
T  22002099 gtgtgtgtaaattttgataagcacaaagggaaaacaattatt 22002058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 277
Target Start/End: Complemental strand, 22008370 - 22008329
Alignment:
Q  236 gtgtgtgtagattgtgataagcacaaatggaaaacaattatt 277  Q
    ||||||||| ||| ||||||||||||| ||||||||||||||    
T  22008370 gtgtgtgtaaattttgataagcacaaagggaaaacaattatt 22008329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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