View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9836_low_29 (Length: 371)
Name: NF9836_low_29
Description: NF9836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9836_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 57 - 345
Target Start/End: Complemental strand, 3028589 - 3028294
Alignment:
| Q |
57 |
cttaaatagagccaatcttggtccttgcattggaagaaaggtgtagcctaagatggctaaatggattaatgctattgtttatttatggaaaaatttatga |
156 |
Q |
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| T |
3028589 |
cttaaatagagccaatcttggtccttacattggaagaaaggtgtagcctaagatggctaaatggattaatgctattgtttatttatggaaaaatttatga |
3028490 |
T |
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| Q |
157 |
taattacctaacaaactaattcacaccacctaattttggtgttattcttgctctctcttcnnnnnnnnttcacatgtttttgaaaaagtataattttaag |
256 |
Q |
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| T |
3028489 |
taattacctaacaaactaattcacaccacctaattttggtgttattcttgctctctc-tcaaaaaaatttcacatgtttttgaaagagtataattttaag |
3028391 |
T |
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| Q |
257 |
gtac--------tgttgtgaaagtgactcaaaattgagtttttggaagtgtcaattcggtggccgaattagcaaaattggtggccgattttgctctg |
345 |
Q |
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| T |
3028390 |
gtacataagtggtgttgtgaaagtgacttaaaattgagtttttggaagtgccaattcggtggccgaattagcaaaattggtggtcgattttgctctg |
3028294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 2981725 - 2981621
Alignment:
| Q |
1 |
tttgcaagatttctcgttcataggtcaatggaatcatagagagagcaaggtggtggcttaaatagagccaatcttggtccttgcattggaagaaaggtgt |
100 |
Q |
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| T |
2981725 |
tttgcaatatttgtcgttcataggtcaatggaatcatag--agagcaaggtggtggctt-aatagagccaatcatggtccttttattggaagaaaggtgt |
2981629 |
T |
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| Q |
101 |
agcctaag |
108 |
Q |
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| T |
2981628 |
agcgtaag |
2981621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 105 - 185
Target Start/End: Complemental strand, 2981456 - 2981379
Alignment:
| Q |
105 |
taagatggctaaatggattaatgctattgtttatttatggaaaaatttatgataattacctaacaaactaattcacaccac |
185 |
Q |
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| T |
2981456 |
taagatggctaaatggattaatgctattgtttatga---gaaaaatttatgatatatacctaaaaaacaaattcacaccac |
2981379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 185
Target Start/End: Complemental strand, 2949827 - 2949743
Alignment:
| Q |
98 |
tgtagcctaagatggctaaatggattaatgctattgtttatttatggaaaaatttatgataattacctaacaaactaattcacaccac |
185 |
Q |
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| T |
2949827 |
tgtagcctaaggtggcttaatggattaatgctatcgtttat---gagaaaaatttatgatatatacctaacaagctaattcaaaccac |
2949743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 261 - 316
Target Start/End: Original strand, 25275904 - 25275959
Alignment:
| Q |
261 |
tgttgtgaaagtgactcaaaattgagtttttggaagtgtcaattcggtggccgaat |
316 |
Q |
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| T |
25275904 |
tgttgtgaaagtgactcaaaattggatttctggaagtgcaaatttggtggccgaat |
25275959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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