View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9836_low_3 (Length: 629)
Name: NF9836_low_3
Description: NF9836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9836_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 504; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 19 - 623
Target Start/End: Complemental strand, 2351927 - 2351323
Alignment:
| Q |
19 |
gtgcaccatttggaagcattagtttcggatttttcaatggaaatatagtcctctgttccaaattgaagtcatatccatattctttatataacgaggttgt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2351927 |
gtgcaccatttggaagcattagtttcggatttttcaatggaaatatagtcctctattccaaattgaagtcatatccatattctttatataacgaggttgt |
2351828 |
T |
|
| Q |
119 |
tttgttaatgccactttgctgaacaaactatatttgttgtttattcccaaaaagataagaattaattgattttgtgaatgataatattgctggcaaattt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2351827 |
tttgttaatgccactttgctgaacaaactatatttgttgtttattcccaaaaagataagaattaattgattttgtgaatgataatattgctggcaaattt |
2351728 |
T |
|
| Q |
219 |
ctgttgaaaccgaaattgtagactgagataagtcgggaaatttgacagtgaggttagactctctgtcgaattattttatttcatttgaacatgaagtgac |
318 |
Q |
| |
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|||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2351727 |
ctgttgaaactgaaattgtagactgagataagttgggaaacttgacagtgaggttaga--ctctgtcgaattattttatttcatttgaacatgaagtgac |
2351630 |
T |
|
| Q |
319 |
ctataaggagcgagcgaatcgaagaagggtaaggattaactatgagtgatcaattgattaactatgtatttttcgtttgagggannnnnnnngttttagt |
418 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
2351629 |
ctataag----gagcgaatcgaagaagggtaaggattaactatgagtgattaattgattaactatgtatttttcgtttgaggttttttttttgttttagt |
2351534 |
T |
|
| Q |
419 |
tac------aacacataaactatatcctaggagaaatacgaacttgcaatggatttttcatcaccacagtgaattcttgtttttccgacaaatcaacatg |
512 |
Q |
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||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2351533 |
tacacataaaccacataaactatatcctaggagaaatacgaacttgcaatggatttttcatcaccacagtgaattcttgtttttccgacaaatcaacatg |
2351434 |
T |
|
| Q |
513 |
cccaccttctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaagtgaagcaaagctaaattatatccgggacagattctccta |
612 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2351433 |
cccaccttctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaagtgaagcaaagctaaattatatccgggacagattctccta |
2351334 |
T |
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| Q |
613 |
ccaacaccaaa |
623 |
Q |
| |
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||||||||||| |
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| T |
2351333 |
ccaacaccaaa |
2351323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 423 - 608
Target Start/End: Complemental strand, 2310665 - 2310480
Alignment:
| Q |
423 |
acacataaactatatcctaggagaaatacgaacttgcaatggatttttcatcaccacagtgaattcttgtttttccgacaaatcaacatgcccaccttct |
522 |
Q |
| |
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|||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||| |||||| ||||||||||||||| || ||| |
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| T |
2310665 |
acacataatctatatcctaggagaaatatgaacttgcactggatttttcatcaccatagtgaattcttgtatttccgtcaaatcaacatgcccgccctct |
2310566 |
T |
|
| Q |
523 |
ggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaagtgaagcaaagctaaattatatccgggacagattct |
608 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||| ||||| |
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| T |
2310565 |
ggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattct |
2310480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 423 - 608
Target Start/End: Complemental strand, 2294334 - 2294149
Alignment:
| Q |
423 |
acacataaactatatcctaggagaaatacgaacttgcaatggatttttcatcaccacagtgaattcttgtttttccgacaaatcaacatgcccaccttct |
522 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||| || ||| |
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| T |
2294334 |
acacataatctatatcctaggagaaatatgaacttgcaatggatttttcatcaccatggtgaattcttgtatttccgtcaaatcaacatgcccgccctct |
2294235 |
T |
|
| Q |
523 |
ggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaagtgaagcaaagctaaattatatccgggacagattct |
608 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||| ||||||||| ||||| |
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| T |
2294234 |
ggaaccttccaatcgaaattccaaaccaagttagccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattct |
2294149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 423 - 624
Target Start/End: Complemental strand, 2327502 - 2327301
Alignment:
| Q |
423 |
acacataaactatatcctaggagaaatacgaacttgcaatggatttttcatcaccacagtgaattcttgtttttccgacaaatcaacatgcccaccttct |
522 |
Q |
| |
|
|||||||| |||||| ||| |||||||| |||||||||||||||||||||||||||| |||||||| |||||| |||||||| ||||| ||||| || |
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| T |
2327502 |
acacataatctatattctatgagaaatatgaacttgcaatggatttttcatcaccacggtgaattcaaatttttctgacaaatcgacatggccaccctcc |
2327403 |
T |
|
| Q |
523 |
ggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaagtgaagcaaagctaaattatatccgggacagattctcctaccaacaccaa |
622 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||| ||||| |||||||||||| | |||| |
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|
| T |
2327402 |
ggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaattatatcccggacaaattctcctaccagctccaa |
2327303 |
T |
|
| Q |
623 |
ac |
624 |
Q |
| |
|
|| |
|
|
| T |
2327302 |
ac |
2327301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 425 - 591
Target Start/End: Complemental strand, 2303945 - 2303779
Alignment:
| Q |
425 |
acataaactatatcctaggagaaatacgaacttgcaatggatttttcatcaccacagtgaattcttgtttttccgacaaatcaacatgcccaccttctgg |
524 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| || || ||||| |
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| T |
2303945 |
acataatctatatcctaggagaaatatgaacttgcaatggatttttcatcaccatattgaattcttgtttttccgacaaatcaacatagccgccctctgg |
2303846 |
T |
|
| Q |
525 |
aaccttccaatcgaaattccaaaccaaattagccacaaaatattccaagtgaagcaaagctaaatta |
591 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||| |
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| T |
2303845 |
aagcttccaatcgaaattccaaaccaaattagccacaaaatattctaaatggagcaaagctaaatta |
2303779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 423 - 624
Target Start/End: Complemental strand, 2321649 - 2321448
Alignment:
| Q |
423 |
acacataaactatatcctaggagaaatacgaacttgcaatggatttttcatcaccacagtgaattcttgtttttccgacaaatcaacatgcccaccttct |
522 |
Q |
| |
|
|||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||| ||||| || |
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| T |
2321649 |
acacataatctataccctaggagaaatatgaacttgcaatggatttttcatcaccatagtgaattcatctttttccgacaaatcaacatggccaccctcc |
2321550 |
T |
|
| Q |
523 |
ggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaagtgaagcaaagctaaattatatccgggacagattctcctaccaacaccaa |
622 |
Q |
| |
|
|||| || ||||| ||||||||||||||| |||||||||||||||||||| || ||||||||||||||| ||||||||| |||||||| ||| | |||| |
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| T |
2321549 |
ggaagctgccaattgaaattccaaaccaagttagccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattctccttccagctccaa |
2321450 |
T |
|
| Q |
623 |
ac |
624 |
Q |
| |
|
|| |
|
|
| T |
2321449 |
ac |
2321448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 436 - 611
Target Start/End: Complemental strand, 2331204 - 2331029
Alignment:
| Q |
436 |
atcctaggagaaatacgaacttgcaatggatttttcatcaccacagtgaattcttgtttttccgacaaatcaacatgcccaccttctggaaccttccaat |
535 |
Q |
| |
|
||||| ||||||||| || | ||||||||||||||||| |||| ||||||||| ||||| || ||||||||||| | ||||| || ||||||||||||| |
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| T |
2331204 |
atccttggagaaatatgagcctgcaatggatttttcatgaccatagtgaattcctgtttctctgacaaatcaacgcgaccaccctcgggaaccttccaat |
2331105 |
T |
|
| Q |
536 |
cgaaattccaaaccaaattagccacaaaatattccaagtgaagcaaagctaaattatatccgggacagattctcct |
611 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| |
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|
| T |
2331104 |
cgaaattccaaaccaaattagccacaaaatattccaaatgaagcaaagctaaattatatccaggacaaattctcct |
2331029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 4e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 436 - 624
Target Start/End: Complemental strand, 41127519 - 41127328
Alignment:
| Q |
436 |
atcctaggagaaatacgaacttgcaatggatttttcatcaccacagtgaattcttgtttttccgacaaatcaacatgcccacct---tctggaaccttcc |
532 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||| ||||| |||||||| |||||||||||||||||||| ||| || ||| ||| ||||| |
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| T |
41127519 |
atcctaggagaaatatgaacttgcagtggatttttcataaccacggtgaattcagttttttccgacaaatcaacataaccagctccctctagaatcttcc |
41127420 |
T |
|
| Q |
533 |
aatcgaaattccaaaccaaattagccacaaaatattccaagtgaagcaaagctaaattatatccgggacagattctcctaccaacaccaaac |
624 |
Q |
| |
|
||| |||||||| ||||||||||||||||| |||||||| || |||||||||||||||||||| ||||| |||||||| ||||| |||||| |
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| T |
41127419 |
aattaaaattccagaccaaattagccacaaagtattccaaatggagcaaagctaaattatatccaggacaaattctcctcccaactccaaac |
41127328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 436 - 511
Target Start/End: Complemental strand, 26507131 - 26507056
Alignment:
| Q |
436 |
atcctaggagaaatacgaacttgcaatggatttttcatcaccacagtgaattcttgtttttccgacaaatcaacat |
511 |
Q |
| |
|
||||||||||| || || ||| |||||||| ||||||||||| ||| ||||| |||||||| ||||||||||||| |
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|
| T |
26507131 |
atcctaggagatatttgagcttccaatggatatttcatcaccatagtaaattcctgtttttctgacaaatcaacat |
26507056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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