View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9836_low_31 (Length: 359)
Name: NF9836_low_31
Description: NF9836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9836_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 20 - 340
Target Start/End: Complemental strand, 35410170 - 35409851
Alignment:
| Q |
20 |
tttcatttgttctttcactaagtgaagaagataagatctaactatttattctttcnnnnnnnncagaggtttggcggttccagatgccactcagccacat |
119 |
Q |
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| T |
35410170 |
tttcatttgttctttcactaagtgaagaagataagatctaactatttattctttcttttttt-cagaggtttggcggttccagatgccactcggccacat |
35410072 |
T |
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| Q |
120 |
ggcattagactacttattgaagattatccttatgcggctgatggactcctcatatggactagtatagagaagttggtcaggacctatgtgaaccattact |
219 |
Q |
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| T |
35410071 |
ggcattagactacttattgaagattatccttatgcggctgatggactcctcatatggtctagtatagagaagttggtcaggacctatgtgaaccattact |
35409972 |
T |
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| Q |
220 |
acaaagatttgaatgccgtttcttctgacaatgaactccagtcctggtacaaagaattcatcaacatggggcaccctgatcataaaaatgctacctggtg |
319 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35409971 |
acaaagatttgaatgccatttcttctgacaatgaactccagtcctggtacaaagaattcatcaacatggggcaccctgatcataaaaatgctacctggtg |
35409872 |
T |
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| Q |
320 |
gcctaaactaaacacccctga |
340 |
Q |
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||||||||||||||||||||| |
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| T |
35409871 |
gcctaaactaaacacccctga |
35409851 |
T |
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