View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9836_low_32 (Length: 357)
Name: NF9836_low_32
Description: NF9836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9836_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 347
Target Start/End: Complemental strand, 3383618 - 3383285
Alignment:
| Q |
18 |
caaagatctgatagactaggatagttttgaactctttaaaatatcctgctgtactgatgaaaatgatatgaaaaattaattgaaaactcttctctcttat |
117 |
Q |
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| T |
3383618 |
caaagatctgatagactaggatagttttgaactctttaaaatatcctgctgtactgatgaaaatgatatgaaaaattaattgaaaactcttctctcttat |
3383519 |
T |
|
| Q |
118 |
cttcaggagctagtactgctcgaaagtactccttcttccctatccttactctatc----acttttttactttagcaaaatgttcttgatttggattcaag |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
3383518 |
cttcaggagctagtactgctcgaaagtactccttcttccctatccttactctatctatcacttgtttactttagcaaaatgttcttgatttggattcaag |
3383419 |
T |
|
| Q |
214 |
ggagctaaattgtttatagtaccatattcattcttcctaaaataaccttgctcacacgacaaatacacagggagataaacattaatttatggtataaata |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3383418 |
ggagctaaattgtttatagtaccatattcattcttcctaaaataaccttgctcacacgacaaatacacagggagataaacattaatttatagtataaata |
3383319 |
T |
|
| Q |
314 |
ctgaaatggaaataaataaaaaatatatcctatg |
347 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
3383318 |
ctgaaatggaaataaataaaaaatatatcctatg |
3383285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 42632896 - 42632940
Alignment:
| Q |
178 |
tttactttagcaaaatgttcttgatttggattcaagggagctaaa |
222 |
Q |
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||||||| | |||||||||||||||||||||| ||||||| |||| |
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| T |
42632896 |
tttacttgaccaaaatgttcttgatttggattgaagggagttaaa |
42632940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 178 - 347
Target Start/End: Original strand, 8532270 - 8532443
Alignment:
| Q |
178 |
tttactttagcaaaatgttcttgatttggattcaagggagctaaattgtttatagtaccatattcattcttccta----aaataaccttgctcacacgac |
273 |
Q |
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||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| || |
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| T |
8532270 |
tttacttcagcaaaatgttcttgatttggattgaagggagctaaattgtttatagtaccatatccattcttcctagctaaaataaccttgctcacactac |
8532369 |
T |
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| Q |
274 |
aaatacacagggagataaacattaatttatggtataaatactgaaatggaaataaataaaaaatatatcctatg |
347 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
8532370 |
aaatacacagggagataaacattaatttatggtataaatactgaaatggatataaataaaacatatatcctatg |
8532443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 49962477 - 49962433
Alignment:
| Q |
178 |
tttactttagcaaaatgttcttgatttggattcaagggagctaaa |
222 |
Q |
| |
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||||||| | |||||||||||||||||||||| |||||||||||| |
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|
| T |
49962477 |
tttacttgaccaaaatgttcttgatttggattgaagggagctaaa |
49962433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 38176516 - 38176560
Alignment:
| Q |
178 |
tttactttagcaaaatgttcttgatttggattcaagggagctaaa |
222 |
Q |
| |
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||||||| | |||||||||||||||||||||| |||||||||||| |
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| T |
38176516 |
tttacttgaccaaaatgttcttgatttggattgaagggagctaaa |
38176560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 218
Target Start/End: Original strand, 39676746 - 39676786
Alignment:
| Q |
178 |
tttactttagcaaaatgttcttgatttggattcaagggagc |
218 |
Q |
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||||||| | |||||||||||||||||||||| |||||||| |
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| T |
39676746 |
tttacttgaccaaaatgttcttgatttggattgaagggagc |
39676786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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