View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9836_low_33 (Length: 357)
Name: NF9836_low_33
Description: NF9836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9836_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 21 - 351
Target Start/End: Complemental strand, 3681992 - 3681662
Alignment:
| Q |
21 |
gaacacaccttccttgtttccccaaacacaatctatatacctccttaattcaaatgggtcataacaagaatctaggattcataacaaaaagttggtttgc |
120 |
Q |
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| T |
3681992 |
gaacacaccttccttgtttccccaaacacaatctatatacctccttaattcaaatgggtcataacaagaatctaggattcataacaaaaagttggtttgc |
3681893 |
T |
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| Q |
121 |
atggaccacaaatattgtattcatgttgttggnnnnnnnngcaaatatgacattggagattgaggaccaagttgaagagccttcaagtggtttattatgc |
220 |
Q |
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| T |
3681892 |
atggaccacaaatattgtattcatgttgttggttttgtttgcaaataggacattggagattgaggacaaagttgaagagccttcaagtggtttattatgc |
3681793 |
T |
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| Q |
221 |
attagtgaatgtgtcacatgtcctacaatttgttcaccaccacctcctaaacttgcttcatcaaattcaaatcaccctcctccttcactcccaacacaaa |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3681792 |
attagtgaatgtgtcacatgtcctacaatttgttcaccaccacctcctaaacttgcttcatcaaattcaaatcaccctcctccttcactcccaacacaaa |
3681693 |
T |
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| Q |
321 |
atccttcacctcctcctttgttaacaccaaa |
351 |
Q |
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|||||||| |||||||||||||||||||||| |
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| T |
3681692 |
atccttcatctcctcctttgttaacaccaaa |
3681662 |
T |
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