View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9836_low_38 (Length: 347)

Name: NF9836_low_38
Description: NF9836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9836_low_38
NF9836_low_38
[»] chr3 (1 HSPs)
chr3 (263-330)||(45455836-45455903)
[»] chr5 (2 HSPs)
chr5 (266-326)||(40165337-40165397)
chr5 (267-311)||(40165206-40165250)
[»] chr2 (2 HSPs)
chr2 (261-311)||(7827154-7827204)
chr2 (12-41)||(28362531-28362560)


Alignment Details
Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 263 - 330
Target Start/End: Complemental strand, 45455903 - 45455836
Alignment:
Q  263 attccatgatccttgattgttgtcaacaacatgaggatcatttaagattctaattctgctgttaattt 330  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  45455903 attccatgatcattgattgttgtcaacaacatgagaatcatttaagattctaattctactgttaattt 45455836  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 266 - 326
Target Start/End: Original strand, 40165337 - 40165397
Alignment:
Q  266 ccatgatccttgattgttgtcaacaacatgaggatcatttaagattctaattctgctgtta 326  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  40165337 ccatgatcattgattgttgtcaacaacatgaggatcatttaagattctaattctactgtta 40165397  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 267 - 311
Target Start/End: Original strand, 40165206 - 40165250
Alignment:
Q  267 catgatccttgattgttgtcaacaacatgaggatcatttaagatt 311  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||    
T  40165206 catgatccttgattgctgtcaaaaacatgaggatcatttaagatt 40165250  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 311
Target Start/End: Complemental strand, 7827204 - 7827154
Alignment:
Q  261 ctattccatgatccttgattgttgtcaacaacatgaggatcatttaagatt 311  Q
    ||||||||||||| |||||||||| ||||||| ||||||||| ||||||||    
T  7827204 ctattccatgatcgttgattgttgacaacaacttgaggatcaattaagatt 7827154  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 41
Target Start/End: Complemental strand, 28362560 - 28362531
Alignment:
Q  12 agagagggacaaccaagaagaatatgatat 41  Q
    ||||||||||||||||||||||||||||||    
T  28362560 agagagggacaaccaagaagaatatgatat 28362531  T

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