View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9836_low_39 (Length: 344)
Name: NF9836_low_39
Description: NF9836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9836_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 17 - 328
Target Start/End: Complemental strand, 20613672 - 20613360
Alignment:
| Q |
17 |
gtaaacaataacggtgtcagcgttacttcaaccactcatcgattaataattacactctcgatctatttctattattacacggtgaatattcgtgtagaag |
116 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
20613672 |
gtaaacaataacagtgtcagcgttacttcaaccactcatctattaataattacactcttgatctatttctattattacacggtgaatattcgtgtagaag |
20613573 |
T |
|
| Q |
117 |
aaccctaactaaaagatatgcgtcaaacgctacaagatttcatttcacaaagcaggttctagagttaacatgttgtgatgtttcagctgggtcatttccc |
216 |
Q |
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||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
20613572 |
aaccctagctaaaagatatgcatcaaacgctacaagatttcatttcacaaagcaagttctagagttaacatgttgcgatgtttcagctgggtcatttccc |
20613473 |
T |
|
| Q |
217 |
ctccattcgctgcatcaaattggcatctatagaagcggcacagaataatcaaatgtaaatcattaagatcatataa-ataaacattgacctttatttcgg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| | |
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| T |
20613472 |
ctccattcgctgcatcaaattggcatctatagaagctgcgcagaataatcaaatgtaaatcattaagttcatataacataaacattgacctttatttcag |
20613373 |
T |
|
| Q |
316 |
agacccacaaaaa |
328 |
Q |
| |
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||||||||||||| |
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| T |
20613372 |
agacccacaaaaa |
20613360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 328
Target Start/End: Complemental strand, 44209182 - 44208867
Alignment:
| Q |
17 |
gtaaacaataacggtgtcagcgttacttcaaccactcatcgattaataattacactctcgatctatttct---attattacacggtgaatattcgtgtag |
113 |
Q |
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||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
44209182 |
gtaaacaataacggtgtcagcgttacttcaaccacccatctattaataattacactctcgatctatttctgatattattacacggtgaatattcctgtag |
44209083 |
T |
|
| Q |
114 |
aagaaccctaactaaaagatatgcgtcaaacgctacaagatttcatttcacaaagcaggttctagagttaacatgttgtgatgtttcagctgggtcattt |
213 |
Q |
| |
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|| |||||||||||||||||| |||||||| |||||| |||||||| ||| ||||||| |||| || |||| ||||||||||||| |||||||||||||| |
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| T |
44209082 |
aataaccctaactaaaagataagcgtcaaatgctacaggatttcatctcataaagcagtttctggaattaaaatgttgtgatgttccagctgggtcattt |
44208983 |
T |
|
| Q |
214 |
cccctccattcgctgcatcaaattggcatctatagaagcggcacagaataatcaaatgtaaatcattaagatcatataa-ataaacattgacctttattt |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||| || |||||||||| |
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| T |
44208982 |
cccctccattcgctgcatcaaattggcatctatagaagctgcagagaataatcaaatgtaaatcattaagatcatataacataaacgttcacctttattt |
44208883 |
T |
|
| Q |
313 |
cggagacccacaaaaa |
328 |
Q |
| |
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||| ||||| ||||| |
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| T |
44208882 |
gggatacccaaaaaaa |
44208867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 17 - 274
Target Start/End: Complemental strand, 44209791 - 44209531
Alignment:
| Q |
17 |
gtaaacaataacggtgtcagcgttacttcaaccactcatcgattaataattacactctcgatctatttct---attattacacggtgaatattcgtgtag |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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|
| T |
44209791 |
gtaaacaataacggtgtcagcgttacttcaaccacccatctattaataattacactctcgatctatttctgatattattacacggtgaatattcctgtag |
44209692 |
T |
|
| Q |
114 |
aagaaccctaactaaaagatatgcgtcaaacgctacaagatttcatttcacaaagcaggttctagagttaacatgttgtgatgtttcagctgggtcattt |
213 |
Q |
| |
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|| |||||||||||||||||| |||||||| |||||| |||||||| ||| ||||||| |||| || |||| ||||||||||||| |||||||||||||| |
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| T |
44209691 |
aataaccctaactaaaagataagcgtcaaatgctacaggatttcatctcataaagcagtttctggaattaaaatgttgtgatgttccagctgggtcattt |
44209592 |
T |
|
| Q |
214 |
cccctccattcgctgcatcaaattggcatctatagaagcggcacagaataatcaaatgtaa |
274 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
44209591 |
cccctccattcgctgcatcaaattggcatctatagaagctgcagagaataatcaaatgtaa |
44209531 |
T |
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