View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9836_low_4 (Length: 622)
Name: NF9836_low_4
Description: NF9836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9836_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 439; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 88 - 603
Target Start/End: Complemental strand, 33095161 - 33094646
Alignment:
| Q |
88 |
ggagaaggagtttttggtggtattattggtacatatggtggttgatttccaggagaaggtacctttggaggagtatagggaacattgggaggactatgaa |
187 |
Q |
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|||||||| || ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33095161 |
ggagaaggtgtctttggtggtgttattggcacatatggtggttgatttccaggagaaggtacctttggaggagtatagggaacattgggaggactatgaa |
33095062 |
T |
|
| Q |
188 |
taggtgaaggtgttttaggaggtataattggaacatagggaggagaattttttctcacagccagcaccacaacaattagtttttgacctttttcacaatt |
287 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33095061 |
taggtgaaggtgttttaggtggtataattggaacatagggaggagatatttttctcacagccagcaccacaacaattagtttttgacctttttcacaatt |
33094962 |
T |
|
| Q |
288 |
atcatcttttccactaatgaaataaaaaggaccagatctatcaagttgaaactcagaatcaccatcatcaaatttcttgatcgggtactttttgttgcat |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33094961 |
atcatcttttccactaatgaaataaaaaggaccagatctatcaagttgaaactcagaatcaccatcatcaaatttcttgatcggatactttttgttgcat |
33094862 |
T |
|
| Q |
388 |
ttatcataatcttccttgttcaccactaacactgagtttgagtccttcttgtacttaaaaactatagtacacnnnnnnntcataattaaaatctagttca |
487 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||| |
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| T |
33094861 |
ttatcataatcttccttgttcaccactaacactgaatttgagtccttcttgtacttaaaaactatagtacacaagaaattcattattaaaatctatctca |
33094762 |
T |
|
| Q |
488 |
caagcaaatcaaaaataaatttttgcattaattgaaattaaacttaccaagaatatcattgacttggaacctattcctccctgtccattgactgtaactc |
587 |
Q |
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| T |
33094761 |
caagcaaatcaaaaatagatttttgcattaaatgaaattaaacttaccaagaatatcattgacttggaacctattcctccctgtccattgactgtaactc |
33094662 |
T |
|
| Q |
588 |
tccgagggattcacaa |
603 |
Q |
| |
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|||||||||||||||| |
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| T |
33094661 |
tccgagggattcacaa |
33094646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 14 - 180
Target Start/End: Complemental strand, 33095337 - 33095171
Alignment:
| Q |
14 |
catagggaggttgattaggtgagggaggagtacttttgggaggtgtataaggagtatttggaggactatagattggagaaggagtttttggtggtattat |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
33095337 |
catagggaggttgattaggtgagggaggagtacttttgggaggtgtataaggagtattaggaggactatagattggagaaggagtttttggtggtattat |
33095238 |
T |
|
| Q |
114 |
tggtacatatggtggttgatttccaggagaaggtacctttggaggagtatagggaacattgggagga |
180 |
Q |
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| T |
33095237 |
tggtacatatggtggttgattttcaggagaaggtgttttcggaggagtataaggaacattaggagga |
33095171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 88 - 230
Target Start/End: Complemental strand, 33095467 - 33095328
Alignment:
| Q |
88 |
ggagaaggagtttttggtggtattattggtacatatggtggttgatttccaggagaaggtacctttggaggagtatagggaacattgggaggactatgaa |
187 |
Q |
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||||||||||||||||||||| | ||||||||||| ||||||||||| | |||||| ||| |||||||||||||| |||||||| |||||| | | || |
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| T |
33095467 |
ggagaaggagtttttggtggtgtaattggtacataaggtggttgattgcgaggagatggtgtttttggaggagtataaggaacatttggaggattgtaaa |
33095368 |
T |
|
| Q |
188 |
taggtgaaggtgttttaggaggtataattggaacatagggagg |
230 |
Q |
| |
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|||||||||| ||||| |||||| || |||||||||||||| |
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| T |
33095367 |
taggtgaaggagtttttggaggtgta---ggaacatagggagg |
33095328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 134
Target Start/End: Complemental strand, 33103765 - 33103722
Alignment:
| Q |
91 |
gaaggagtttttggtggtattattggtacatatggtggttgatt |
134 |
Q |
| |
|
|||||||||||||||||| | ||||| ||||||||||||||||| |
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|
| T |
33103765 |
gaaggagtttttggtggtgtaattggcacatatggtggttgatt |
33103722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 88 - 134
Target Start/End: Complemental strand, 33103858 - 33103812
Alignment:
| Q |
88 |
ggagaaggagtttttggtggtattattggtacatatggtggttgatt |
134 |
Q |
| |
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||||||||||||||||||||| | ||||| ||||| ||||||||||| |
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| T |
33103858 |
ggagaaggagtttttggtggtgtaattggaacataaggtggttgatt |
33103812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 33103802 - 33103734
Alignment:
| Q |
156 |
aggagtatagggaacattgggaggactatgaataggtgaaggtgttttaggaggtataattggaacata |
224 |
Q |
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||||||||| |||||||| ||||| ||||||||||||||| ||||| || ||| ||||||| ||||| |
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| T |
33103802 |
aggagtataaggaacattaggaggggcatgaataggtgaaggagtttttggtggtgtaattggcacata |
33103734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 451
Target Start/End: Original strand, 22213514 - 22213619
Alignment:
| Q |
346 |
tcaccatcatcaaatttcttgatcgggtactttttgttgcatttatcataatcttccttgttcaccactaacactgagtttgagtccttcttgtacttaa |
445 |
Q |
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|||||||| || || |||||||| |||| |||||||||| || ||||||||||| || ||||| | ||||| |||| ||| ||||||||||||| | |
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| T |
22213514 |
tcaccatcttcgaacttcttgattgggtttgttttgttgcacttttcataatcttctttcttcacttccaacaccgagtctgaacccttcttgtacttga |
22213613 |
T |
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| Q |
446 |
aaacta |
451 |
Q |
| |
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|||||| |
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| T |
22213614 |
aaacta |
22213619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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