View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9836_low_40 (Length: 328)
Name: NF9836_low_40
Description: NF9836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9836_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 11 - 148
Target Start/End: Original strand, 21055672 - 21055812
Alignment:
| Q |
11 |
caaaggatactatgttaaaatgaaactcatgcataaacatggtattagacctcaacaa---gnnnnnnnccattttcataaatattacaaatggattctt |
107 |
Q |
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| T |
21055672 |
caaaggatactatgttaaaatgaaactcatgcataaacatggtattagacctcaacaacaagaaaaaaaccattttcataaatattacaaatggattctt |
21055771 |
T |
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| Q |
108 |
tggctttctctttctctctatttcttcacttcttacctcat |
148 |
Q |
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| T |
21055772 |
tggctttctctttctctctatttcttcacttcttacctcat |
21055812 |
T |
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Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 89 - 150
Target Start/End: Complemental strand, 35417504 - 35417443
Alignment:
| Q |
89 |
atattacaaatggattctttggctttctctttctctctatttcttcacttcttacctcatca |
150 |
Q |
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| T |
35417504 |
atattacaaatggcttctttggttttctctttctctttatttcttcacctcttatctcatca |
35417443 |
T |
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