View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9836_low_41 (Length: 318)
Name: NF9836_low_41
Description: NF9836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9836_low_41 |
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Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 3070702 - 3070404
Alignment:
| Q |
1 |
tgtgttgaaattaaatccaatttgtgttgcttcacttatgaagagcttgaagaagctaccaatggatttgacaaagagctaggaaggggagcttttggta |
100 |
Q |
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| T |
3070702 |
tgtgttgaaattaaatccaatttgtgttgcttcacttatgaagagcttgaagaagctaccaatggatttgacaaagagctaggaaggggagcttttggta |
3070603 |
T |
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| Q |
101 |
ttgtttacgaaggagtcatcaacaacgacacagattccaaaactcgggtggcagtgcaaaagttaaacagttttttgttggatcaagcccatagggaatt |
200 |
Q |
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| T |
3070602 |
ttgtttacgaaggagtcatcaacaacgacacagattccaaaactcgggtggcagtgcaaaagttaaacagttttttgttggatcaagcccatagggaatt |
3070503 |
T |
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| Q |
201 |
caggaatgagttgaattccattggtctcactcatcacaagaacttggttcgtttacttggattttgtgagtgtagaagtgaaagattgcttgtttatga |
299 |
Q |
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| T |
3070502 |
caggaatgagttgaattccattggtctcactcatcacaagaacttggttcgtttacttggattttgtgagtgtagaagtgaaagattgcttgtttatga |
3070404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 299
Target Start/End: Original strand, 3056232 - 3056514
Alignment:
| Q |
17 |
ccaatttgtgttgcttcacttatgaagagcttgaagaagctaccaatggatttgacaaagagctaggaaggggagcttttggtattgtttacgaaggagt |
116 |
Q |
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| T |
3056232 |
ccaatttgcgttgcttcacttatgaagagcttgaagaagctaccaatggatttgacaaagagctaggaaggggagcttttggaatagtttacgaaggagt |
3056331 |
T |
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| Q |
117 |
catcaacaacgacacagattccaaaactcgggtggcagtgcaaaagttaaacagttttttgttggatcaagcccatagggaattcaggaatgagttgaat |
216 |
Q |
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| T |
3056332 |
catcaacaacaacacaacttgcaaaactcgcgtggcagtgaagaagttgaacagttttctgttggatcaagctcatcgggaattcaggaatgagctgaat |
3056431 |
T |
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| Q |
217 |
tccattggtctcactcatcacaagaacttggttcgtttacttggattttgtgagtgtagaagtgaaagattgcttgtttatga |
299 |
Q |
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| T |
3056432 |
gtcattggtctcactcatcacaagaacttggttcgtttacttggattttgcgggagtggaagtgaaagattgcttgtttatga |
3056514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 5 - 299
Target Start/End: Original strand, 3035352 - 3035646
Alignment:
| Q |
5 |
ttgaaattaaatccaatttgtgttgcttcacttatgaagagcttgaagaagctaccaatggatttgacaaagagctaggaaggggagcttttggtattgt |
104 |
Q |
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| T |
3035352 |
ttgaaattgaatcccatttgcgttgcttcacttatgcagagcttgaagaagctactaatggattcgacaaagagctaggaaggggagcttttggtattgt |
3035451 |
T |
|
| Q |
105 |
ttacgaaggagtcatcaacaacgacacagattccaaaactcgggtggcagtgcaaaagttaaacagttttttgttggatcaagcccatagggaattcagg |
204 |
Q |
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||| ||||||||| |||||||| |||| | ||||||| |||| |||||||| ||||||| ||||||||| ||||||||||||| |||| |||||| ||| |
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| T |
3035452 |
ttatgaaggagtcgtcaacaacaacaccgcttccaaagctcgtgtggcagtaaaaaagttgaacagttttatgttggatcaagctcataaggaatttagg |
3035551 |
T |
|
| Q |
205 |
aatgagttgaattccattggtctcactcatcacaagaacttggttcgtttacttggattttgtgagtgtagaagtgaaagattgcttgtttatga |
299 |
Q |
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| T |
3035552 |
aatgaactgaatgccattggtctcactcatcacaagaacttggttcgtttacttggattttgtgagagtggaagtgaaagactgcttgtttatga |
3035646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 177
Target Start/End: Original strand, 21457268 - 21457385
Alignment:
| Q |
56 |
ctaccaatggatttgacaaagagctaggaaggggagcttttggtattgtttacgaaggagtcatcaacaacgacacagattccaaaactcgggtggcagt |
155 |
Q |
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| T |
21457268 |
ctaccgatagatttgacaaagagcaaagaaggagaggttttggtattg-ttatgaaggagtcatcagca---ccacatgttccaaaactggcgtggcagt |
21457363 |
T |
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| Q |
156 |
gcaaaagttaaacagttttttg |
177 |
Q |
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| T |
21457364 |
gaaaaaattgaacaattttttg |
21457385 |
T |
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